2024-05-03 19:43:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_001390757 1086 bp mRNA linear PLN 20-OCT-2023 DEFINITION Aspergillus niger uncharacterized protein (An05g02260), partial mRNA. ACCESSION XM_001390757 VERSION XM_001390757.1 DBLINK BioProject: PRJNA19263 BioSample: SAMEA3283178 KEYWORDS RefSeq. SOURCE Aspergillus niger ORGANISM Aspergillus niger Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati. REFERENCE 1 (bases 1 to 1086) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-OCT-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NT_166521). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1086 /organism="Aspergillus niger" /mol_type="mRNA" /db_xref="taxon:5061" /chromosome="VII" /map="unlocalized" /clone="An05" gene <1..>1086 /locus_tag="An05g02260" /db_xref="GeneID:4980963" CDS 1..1086 /locus_tag="An05g02260" /EC_number="1.1.1.9" /inference="profile:COGS:COG1063" /inference="profile:PFAM:PF00107" /inference="similar to AA sequence:UniProtKB:AF072541.1" /note="Catalytic activity: xylitol + NAD(+) <=> D-xylulose + NADH.; Cofactor: zinc 2+; Similarity: similarities to L-Iditol 2-dehydrogenases (EC 1. 1. 1. 14).; Title: strong similarity to xylitol dehydrogenase xdh - Galactocandida mastotermitis; See PMID 10661867" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_001390794.1" /db_xref="GeneID:4980963" /db_xref="GOA:A2QL21" /db_xref="InterPro:IPR002085" /db_xref="InterPro:IPR002328" /db_xref="InterPro:IPR011032" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013154" /db_xref="InterPro:IPR016040" /db_xref="UniProtKB/TrEMBL:A2QL21" /translation="
MENPSFVLRNIKDVVIEDRPKPILKDPHDVMVHVAQTGICGSDVHYWQRGRIGDFVLTGPMVLGHESAGVVVEVGDKVRHLKPGDRVAMEPGVPCRRCDYCRSGSYNLCGDTIFAATPPWDGTLAKYYVNAADFCYKIPDHMTLEEAAMVEPVSVAVAIAKTANLQAHQTVLVLGCGPIGVLCQAVAKAAGARTIIGVDVILSRLEVAKSYGIDHTFMPSRAEPGTDPMVHAERVAMXLKEELGLGEGADVVLECSGAEPCVQMGIYAARRGATFVQAGMGKENILFPITAVCTRGLTIKGSIRYLTGCYPAAIDLIAKGKIDVKRLITNRFPFEKAEEAFELVKAGRADVFKVMIAGVQE"
misc_feature 13..1074 /locus_tag="An05g02260" /note="Sorbitol dehydrogenase; Region: sorbitol_DH; cd05285" /db_xref="CDD:176188" misc_feature order(118..120,124..126,136..138,154..156,163..165, 193..195,340..342,349..351,451..453,838..840,907..912) /locus_tag="An05g02260" /note="inhibitor binding site [active]" /db_xref="CDD:176188" misc_feature order(118..120,124..126,193..198,451..453) /locus_tag="An05g02260" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176188" misc_feature order(283..285,292..294,301..303,325..327) /locus_tag="An05g02260" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176188" misc_feature order(463..465,529..537,592..600,610..612,655..657, 763..768,772..774,832..840,904..912) /locus_tag="An05g02260" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176188" misc_feature order(469..471,502..504,508..510,556..558,565..573, 577..579,604..606,652..654,721..723,934..936,943..948, 955..957) /locus_tag="An05g02260" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176188" ORIGIN
atggagaacccctcatttgtcctgcgcaacatcaaagatgtagtcattgaagaccggcccaaacccatcctcaaagacccccatgatgtgatggtccatgtagcacaaacaggtatttgtggaagtgatgttcactactggcaacgcggtcgcatcggcgacttcgtcctcaccgggcccatggtcctcggccatgaatctgccggcgtagttgtcgaagtcggcgacaaagtccgacacctcaaacccggcgatcgcgtcgccatggaaccgggcgtaccctgtcgtcgctgcgactactgccgcagcggatcatacaacctctgtggcgatacgatcttcgctgcgaccccgccctgggacggcaccctcgccaaatactacgtcaacgccgccgacttctgctacaagataccggaccacatgacgctcgaggaagcagccatggtggagcccgtgtctgtggccgtggccatcgccaagacagccaacctgcaagcacaccagactgtgctggttctgggatgcggtccgatcggcgtactatgccaggccgtggctaaggctgccggagccaggaccatcatcggagtggatgtgattctgtcccgactggaggtagccaagtcgtacggcatcgatcacacattcatgccctcgcgggccgagcccggcactgacccgatggtgcatgcggagcgggtagcgatgcanttgaaggaggagctgggtctgggagaaggcgcagacgtggtgttggagtgctctggtgctgagccgtgtgtgcagatgggtatctacgcagcccgccggggagccacattcgtgcaggctggcatgggcaaggagaacattctgttccccattacggcggtgtgcacgcgtgggttgaccatcaagggatccattcggtatctgaccgggtgctatccggcggctatcgacttgattgccaagggcaagattgatgtgaagcggttgatcacgaataggttcccgttcgagaaggccgaggaggcattcgagttggtcaaggctggacgggcggatgtgttcaaagttatgattgcgggagtgcaggagtaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]