2024-03-28 17:06:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_001276634 3156 bp mRNA linear PLN 13-NOV-2023 DEFINITION Aspergillus clavatus NRRL 1 RNA interference and gene silencing protein (Qde2), putative (ACLA_058710), partial mRNA. ACCESSION XM_001276634 VERSION XM_001276634.1 DBLINK BioProject: PRJNA18467 BioSample: SAMN02953636 KEYWORDS RefSeq. SOURCE Aspergillus clavatus NRRL 1 ORGANISM Aspergillus clavatus NRRL 1 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati. REFERENCE 1 (bases 1 to 3156) AUTHORS Fedorova,N.D., Khaldi,N., Joardar,V.S., Maiti,R., Amedeo,P., Anderson,M.J., Crabtree,J., Silva,J.C., Badger,J.H., Albarraq,A., Angiuoli,S., Bussey,H., Bowyer,P., Cotty,P.J., Dyer,P.S., Egan,A., Galens,K., Fraser-Liggett,C.M., Haas,B.J., Inman,J.M., Kent,R., Lemieux,S., Malavazi,I., Orvis,J., Roemer,T., Ronning,C.M., Sundaram,J.P., Sutton,G., Turner,G., Venter,J.C., White,O.R., Whitty,B.R., Youngman,P., Wolfe,K.H., Goldman,G.H., Wortman,J.R., Jiang,B., Denning,D.W. and Nierman,W.C. TITLE Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus JOURNAL PLoS Genet. 4 (4), E1000046 (2008) PUBMED 18404212 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3156) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3156) AUTHORS Nierman,W.C. TITLE Direct Submission JOURNAL Submitted (26-OCT-2006) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_001517111). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3156 /organism="Aspergillus clavatus NRRL 1" /mol_type="mRNA" /strain="NRRL 1" /type_material="culture from type material of Aspergillus clavatus" /db_xref="taxon:344612" /chromosome="Unknown" gene <1..>3156 /locus_tag="ACLA_058710" /db_xref="GeneID:4708781" CDS 1..3156 /locus_tag="ACLA_058710" /note="encoded by transcript ACLA_058710A; predicted by EVM2" /codon_start=1 /product="RNA interference and gene silencing protein (Qde2), putative" /protein_id="XP_001276635.1" /db_xref="GeneID:4708781" /translation="
MSSSRGAGDFQRGRGRGGDRDRGRGGDRGGGRGGTMELPFRPNESRGGSFRGGDSRGRGDGSRGRGRGDYRGGGRGDFGGRGGRGGGFRGGRGDHGPRIFSQGNRVPSPSSKVEQTETAIAKALVVKHQKSAGQARYPERPGYGTQGTPVTLYANYFELKSVGKELFRYNVDILADSARTKPTGKKARQIIRLLLDEHFLQYSNSIATDYKSTLISRVELPSQGQYDVRYKDENDDDYPEQPRVYRVDCQFTGRLNPGDLLNYLTSANSSAMFESKAEVLQAMNIVMGHHPKTDRTVASVGANKHFATHPDLTERYDLGAGLEVLRGFFVSVRAATARILVNVQVKYAACYQEGPLGNVINEYQRGNSRNIYKLEAFVKRLRIQAIHIVRKNKKGQVVPRIKTIAGLATRADGASLPHPPKVARHGAGPRDVQFFLEAPGQKSEPGSSKGKKGKKPAKAGPEAAGRYVTVADFFLQEYKKTLDPNMPVVNVGTRENPSYLPVEVCIVEPGQPAKSKLTPFQTRNMLAFAVRTPPQNAQSIVSKGTDVLGLKDPLNPTLENFGIHPDLQLVTVTGRVLSAPRVYYKDAKSNPRHIDTMGGSWNMKAIKFSRPTSMASWTWLYIDSEKTRPHFENPNALNAKLQEFAAKLNEMGVTTPAPKPGMMIKLTGNNHEGEIYRAVEELMKRHNPNLILSIMYGSDTEAYNSLKKVCDVHCGVRNINVLAEKLRGANDQYYANVGLKFNLKLGGANQSLKTSELGIVAEGKTMLVGIDVTHPSPGSSATAPSVAGMVASIDSSLSQWPADIRIQTSRQEMVSDLDAMLKARLQRWARTNKNALPENIIVYRDGVSEGQYDLVIEKELPLLKKACVEIYPPTDTKKNLPRISIVVVGKRHHTRFYPTRDEDADRSANPKNGTVVDRGVTEARNWDFFLQAHTAIKGTARPAHYFTVWDEIFARQKPAAPFQNAADVLEDLTHRICYLFGRATKAVSICPPAYYADLVCTRARCYLSSVFDPTPTATPAASEIAGSGRGGVPDSGDVQIHGNVRDTMFYI"
misc_feature 388..3150 /locus_tag="ACLA_058710" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1666..3021 /locus_tag="ACLA_058710" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2107..2109,2119..2121,2155..2166,2173..2175, 2197..2199,2206..2208,2218..2220,2230..2232) /locus_tag="ACLA_058710" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2311..2313,2317..2319,2533..2535,2989..2991) /locus_tag="ACLA_058710" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtccagctcgagaggtgctggggatttccagcgaggccggggcagaggaggcgaccgtgatagagggcgtggtggagatcgcggcggcggccgtggaggaaccatggagctgccattccgccccaacgagtctagaggaggttctttccgtggaggagactcgcgaggccggggagatggatccagaggtcgtggaagaggcgattatagaggcggtggcagaggggattttggaggcagaggggggagagggggaggctttcgtggtggtcgaggggatcacggccctcgcatcttctctcagggtaatcgtgtcccatcacccagttcgaaggtcgaacagactgaaaccgccattgccaaagctctggtggtgaagcatcagaagtcagctggccaggcgcgttaccccgagcgtccgggatatggcacacagggtacgccagtgacgctctacgccaattactttgagttgaagtctgtggggaaggagttgttccgctacaacgtggatattctcgccgattcagccaggaccaagcccactgggaagaaggcccgccagatcatccggctcttgctcgacgagcatttcctgcaatattcaaatagcatcgcgactgattacaagtcgaccctcatctcgagagtcgagctgccaagccagggccagtacgacgtgcgttataaagatgaaaatgacgatgactatccagaacagccccgggtgtaccgcgtcgactgtcagttcactggaagactcaaccccggtgaccttcttaactacctaacgtctgcaaattcctctgctatgttcgaatccaaggcggaggtgcttcaggcgatgaacatagtcatgggccatcatcccaaaacggaccgaactgtggcatcggttggtgcgaacaagcattttgcaacgcaccctgacctgactgagcgatacgatctcggtgcgggtctcgaagtcctgcgaggcttttttgtcagcgtccgagcggcaactgcacgcattctcgttaacgtccaagtcaaatatgctgcgtgctaccaggaaggaccattagggaatgtgatcaacgagtaccagcgtggcaacagccggaatatctacaagctggaggcttttgtgaaaaggttgcgcattcaagccattcatattgtccgaaagaacaagaagggacaggttgtaccaaggatcaagaccattgccgggcttgcaaccagggcagatggcgcatcgcttccccatcctccgaaggtcgcaagacacggagccggccccagggacgttcaattctttctcgaggcgccgggtcagaagagcgagcccgggagttccaaggggaagaagggcaagaagcctgcaaaggcgggcccggaagcagctggccgatatgtcactgttgccgatttcttcttgcaagaatacaaaaagaccctggatcccaacatgccagtggttaacgtcggcacaagggagaacccatcttatctgccagttgaagtctgtattgtggaaccaggccagcctgccaaatccaaactgaccccattccaaacccgaaacatgctggcctttgctgtccgcaccccgcctcagaatgcacagtcgattgtgtccaagggtaccgatgtcctgggacttaaggaccctcttaaccccacgctggagaactttggcatacacccagacctacaacttgtcacggtgactggacgggttctttctgctccacgcgtatactacaaggatgccaagtctaacccacgacacatcgacaccatgggaggtagttggaacatgaaagcaatcaagttctcccggcccacctcaatggcgtcctggacttggctctatatcgacagcgaaaagaccaggccacacttcgagaaccccaacgccctgaacgccaaactccaggaatttgcggccaaattgaacgagatgggtgtcacgacgcccgcgccgaagcctggaatgatgatcaaattgacaggcaacaaccacgaaggcgagatctaccgggccgtcgaggagctgatgaagcggcacaaccccaacctgatcctgtcgatcatgtacggcagcgacaccgaggcgtacaacagcctcaagaaggtctgcgacgtccactgcggcgtgcgcaatatcaacgtgctcgcggagaagctgaggggcgccaacgaccagtactacgcgaacgtcgggctcaagttcaacctgaagctcggcggcgccaaccagtcgctgaagacgagcgagctgggcatcgtcgccgagggcaaaacaatgctcgtcggcatcgacgtcacccacccgtccccgggctcctcggccacagcccccagcgtcgccggcatggtcgcctccatcgactcctccctcagccaatggcccgccgacatccgcatccagacctcccgccaggagatggtctcggacctagacgcgatgctcaaggcgcggctgcagcgctgggcgcgcacaaacaagaacgccctccccgagaacatcatcgtctaccgcgacggcgtctcagagggccagtacgacctggtcatcgagaaggagctgccgctgctcaagaaggcctgcgtggagatctaccctcccaccgacaccaaaaagaacctcccgcgcatctccatcgtcgtcgtcggcaagcgccaccacacccgcttctacccgacccgcgatgaggacgctgaccgctccgcgaaccccaagaacggcaccgtcgtcgaccgcggcgtcaccgaggcccgcaactgggacttcttcctccaggcccacaccgccatcaagggtaccgcccgccccgcccactacttcaccgtctgggacgagatcttcgcccgccagaaacccgccgcccccttccagaacgccgccgacgtcctcgaggacctcacccacagaatctgttacctgttcggccgcgccaccaaggccgtcagcatctgtcctcccgcgtactacgccgatctggtctgtacgcgtgcccgttgctacctgagcagtgtcttcgacccgactcccacggcgactcctgctgcgagtgagatcgcgggcagtggccggggtggtgtgcctgatagcggtgatgttcagatccatggtaatgtgcgcgacaccatgttttacatctga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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