GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-28 17:06:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_001276634            3156 bp    mRNA    linear   PLN 13-NOV-2023
DEFINITION  Aspergillus clavatus NRRL 1 RNA interference and gene silencing
            protein (Qde2), putative (ACLA_058710), partial mRNA.
ACCESSION   XM_001276634
VERSION     XM_001276634.1
DBLINK      BioProject: PRJNA18467
            BioSample: SAMN02953636
KEYWORDS    RefSeq.
SOURCE      Aspergillus clavatus NRRL 1
  ORGANISM  Aspergillus clavatus NRRL 1
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus; Aspergillus subgen. Fumigati.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Fedorova,N.D., Khaldi,N., Joardar,V.S., Maiti,R., Amedeo,P.,
            Anderson,M.J., Crabtree,J., Silva,J.C., Badger,J.H., Albarraq,A.,
            Angiuoli,S., Bussey,H., Bowyer,P., Cotty,P.J., Dyer,P.S., Egan,A.,
            Galens,K., Fraser-Liggett,C.M., Haas,B.J., Inman,J.M., Kent,R.,
            Lemieux,S., Malavazi,I., Orvis,J., Roemer,T., Ronning,C.M.,
            Sundaram,J.P., Sutton,G., Turner,G., Venter,J.C., White,O.R.,
            Whitty,B.R., Youngman,P., Wolfe,K.H., Goldman,G.H., Wortman,J.R.,
            Jiang,B., Denning,D.W. and Nierman,W.C.
  TITLE     Genomic islands in the pathogenic filamentous fungus Aspergillus
            fumigatus
  JOURNAL   PLoS Genet. 4 (4), E1000046 (2008)
   PUBMED   18404212
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3156)
  AUTHORS   Nierman,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2006) The Institute for Genomic Research, 9712
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_001517111).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Aspergillus clavatus NRRL 1"
                     /mol_type="mRNA"
                     /strain="NRRL 1"
                     /type_material="culture from type material of Aspergillus
                     clavatus"
                     /db_xref="taxon:344612"
                     /chromosome="Unknown"
     gene            <1..>3156
                     /locus_tag="ACLA_058710"
                     /db_xref="GeneID:4708781"
     CDS             1..3156
                     /locus_tag="ACLA_058710"
                     /note="encoded by transcript ACLA_058710A;
                     predicted by EVM2"
                     /codon_start=1
                     /product="RNA interference and gene silencing protein
                     (Qde2), putative"
                     /protein_id="XP_001276635.1"
                     /db_xref="GeneID:4708781"
                     /translation="
MSSSRGAGDFQRGRGRGGDRDRGRGGDRGGGRGGTMELPFRPNESRGGSFRGGDSRGRGDGSRGRGRGDYRGGGRGDFGGRGGRGGGFRGGRGDHGPRIFSQGNRVPSPSSKVEQTETAIAKALVVKHQKSAGQARYPERPGYGTQGTPVTLYANYFELKSVGKELFRYNVDILADSARTKPTGKKARQIIRLLLDEHFLQYSNSIATDYKSTLISRVELPSQGQYDVRYKDENDDDYPEQPRVYRVDCQFTGRLNPGDLLNYLTSANSSAMFESKAEVLQAMNIVMGHHPKTDRTVASVGANKHFATHPDLTERYDLGAGLEVLRGFFVSVRAATARILVNVQVKYAACYQEGPLGNVINEYQRGNSRNIYKLEAFVKRLRIQAIHIVRKNKKGQVVPRIKTIAGLATRADGASLPHPPKVARHGAGPRDVQFFLEAPGQKSEPGSSKGKKGKKPAKAGPEAAGRYVTVADFFLQEYKKTLDPNMPVVNVGTRENPSYLPVEVCIVEPGQPAKSKLTPFQTRNMLAFAVRTPPQNAQSIVSKGTDVLGLKDPLNPTLENFGIHPDLQLVTVTGRVLSAPRVYYKDAKSNPRHIDTMGGSWNMKAIKFSRPTSMASWTWLYIDSEKTRPHFENPNALNAKLQEFAAKLNEMGVTTPAPKPGMMIKLTGNNHEGEIYRAVEELMKRHNPNLILSIMYGSDTEAYNSLKKVCDVHCGVRNINVLAEKLRGANDQYYANVGLKFNLKLGGANQSLKTSELGIVAEGKTMLVGIDVTHPSPGSSATAPSVAGMVASIDSSLSQWPADIRIQTSRQEMVSDLDAMLKARLQRWARTNKNALPENIIVYRDGVSEGQYDLVIEKELPLLKKACVEIYPPTDTKKNLPRISIVVVGKRHHTRFYPTRDEDADRSANPKNGTVVDRGVTEARNWDFFLQAHTAIKGTARPAHYFTVWDEIFARQKPAAPFQNAADVLEDLTHRICYLFGRATKAVSICPPAYYADLVCTRARCYLSSVFDPTPTATPAASEIAGSGRGGVPDSGDVQIHGNVRDTMFYI"
     misc_feature    388..3150
                     /locus_tag="ACLA_058710"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1666..3021
                     /locus_tag="ACLA_058710"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2107..2109,2119..2121,2155..2166,2173..2175,
                     2197..2199,2206..2208,2218..2220,2230..2232)
                     /locus_tag="ACLA_058710"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2311..2313,2317..2319,2533..2535,2989..2991)
                     /locus_tag="ACLA_058710"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgtccagctcgagaggtgctggggatttccagcgaggccggggcagaggaggcgaccgtgatagagggcgtggtggagatcgcggcggcggccgtggaggaaccatggagctgccattccgccccaacgagtctagaggaggttctttccgtggaggagactcgcgaggccggggagatggatccagaggtcgtggaagaggcgattatagaggcggtggcagaggggattttggaggcagaggggggagagggggaggctttcgtggtggtcgaggggatcacggccctcgcatcttctctcagggtaatcgtgtcccatcacccagttcgaaggtcgaacagactgaaaccgccattgccaaagctctggtggtgaagcatcagaagtcagctggccaggcgcgttaccccgagcgtccgggatatggcacacagggtacgccagtgacgctctacgccaattactttgagttgaagtctgtggggaaggagttgttccgctacaacgtggatattctcgccgattcagccaggaccaagcccactgggaagaaggcccgccagatcatccggctcttgctcgacgagcatttcctgcaatattcaaatagcatcgcgactgattacaagtcgaccctcatctcgagagtcgagctgccaagccagggccagtacgacgtgcgttataaagatgaaaatgacgatgactatccagaacagccccgggtgtaccgcgtcgactgtcagttcactggaagactcaaccccggtgaccttcttaactacctaacgtctgcaaattcctctgctatgttcgaatccaaggcggaggtgcttcaggcgatgaacatagtcatgggccatcatcccaaaacggaccgaactgtggcatcggttggtgcgaacaagcattttgcaacgcaccctgacctgactgagcgatacgatctcggtgcgggtctcgaagtcctgcgaggcttttttgtcagcgtccgagcggcaactgcacgcattctcgttaacgtccaagtcaaatatgctgcgtgctaccaggaaggaccattagggaatgtgatcaacgagtaccagcgtggcaacagccggaatatctacaagctggaggcttttgtgaaaaggttgcgcattcaagccattcatattgtccgaaagaacaagaagggacaggttgtaccaaggatcaagaccattgccgggcttgcaaccagggcagatggcgcatcgcttccccatcctccgaaggtcgcaagacacggagccggccccagggacgttcaattctttctcgaggcgccgggtcagaagagcgagcccgggagttccaaggggaagaagggcaagaagcctgcaaaggcgggcccggaagcagctggccgatatgtcactgttgccgatttcttcttgcaagaatacaaaaagaccctggatcccaacatgccagtggttaacgtcggcacaagggagaacccatcttatctgccagttgaagtctgtattgtggaaccaggccagcctgccaaatccaaactgaccccattccaaacccgaaacatgctggcctttgctgtccgcaccccgcctcagaatgcacagtcgattgtgtccaagggtaccgatgtcctgggacttaaggaccctcttaaccccacgctggagaactttggcatacacccagacctacaacttgtcacggtgactggacgggttctttctgctccacgcgtatactacaaggatgccaagtctaacccacgacacatcgacaccatgggaggtagttggaacatgaaagcaatcaagttctcccggcccacctcaatggcgtcctggacttggctctatatcgacagcgaaaagaccaggccacacttcgagaaccccaacgccctgaacgccaaactccaggaatttgcggccaaattgaacgagatgggtgtcacgacgcccgcgccgaagcctggaatgatgatcaaattgacaggcaacaaccacgaaggcgagatctaccgggccgtcgaggagctgatgaagcggcacaaccccaacctgatcctgtcgatcatgtacggcagcgacaccgaggcgtacaacagcctcaagaaggtctgcgacgtccactgcggcgtgcgcaatatcaacgtgctcgcggagaagctgaggggcgccaacgaccagtactacgcgaacgtcgggctcaagttcaacctgaagctcggcggcgccaaccagtcgctgaagacgagcgagctgggcatcgtcgccgagggcaaaacaatgctcgtcggcatcgacgtcacccacccgtccccgggctcctcggccacagcccccagcgtcgccggcatggtcgcctccatcgactcctccctcagccaatggcccgccgacatccgcatccagacctcccgccaggagatggtctcggacctagacgcgatgctcaaggcgcggctgcagcgctgggcgcgcacaaacaagaacgccctccccgagaacatcatcgtctaccgcgacggcgtctcagagggccagtacgacctggtcatcgagaaggagctgccgctgctcaagaaggcctgcgtggagatctaccctcccaccgacaccaaaaagaacctcccgcgcatctccatcgtcgtcgtcggcaagcgccaccacacccgcttctacccgacccgcgatgaggacgctgaccgctccgcgaaccccaagaacggcaccgtcgtcgaccgcggcgtcaccgaggcccgcaactgggacttcttcctccaggcccacaccgccatcaagggtaccgcccgccccgcccactacttcaccgtctgggacgagatcttcgcccgccagaaacccgccgcccccttccagaacgccgccgacgtcctcgaggacctcacccacagaatctgttacctgttcggccgcgccaccaaggccgtcagcatctgtcctcccgcgtactacgccgatctggtctgtacgcgtgcccgttgctacctgagcagtgtcttcgacccgactcccacggcgactcctgctgcgagtgagatcgcgggcagtggccggggtggtgtgcctgatagcggtgatgttcagatccatggtaatgtgcgcgacaccatgttttacatctga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]