LOCUS       NR_199861               1686 bp    RNA     linear   PRI 14-JUL-2025
DEFINITION  Homo sapiens long intergenic non-protein coding RNA 471
            (LINC00471), transcript variant 3, long non-coding RNA.
ACCESSION   NR_199861
VERSION     NR_199861.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Berndt,S.I., Gustafsson,S., Magi,R., Ganna,A., Wheeler,E.,
            Feitosa,M.F., Justice,A.E., Monda,K.L., Croteau-Chonka,D.C.,
            Day,F.R., Esko,T., Fall,T., Ferreira,T., Gentilini,D.,
            Jackson,A.U., Luan,J., Randall,J.C., Vedantam,S., Willer,C.J.,
            Winkler,T.W., Wood,A.R., Workalemahu,T., Hu,Y.J., Lee,S.H.,
            Liang,L., Lin,D.Y., Min,J.L., Neale,B.M., Thorleifsson,G., Yang,J.,
            Albrecht,E., Amin,N., Bragg-Gresham,J.L., Cadby,G., den Heijer,M.,
            Eklund,N., Fischer,K., Goel,A., Hottenga,J.J., Huffman,J.E.,
            Jarick,I., Johansson,A., Johnson,T., Kanoni,S., Kleber,M.E.,
            Konig,I.R., Kristiansson,K., Kutalik,Z., Lamina,C., Lecoeur,C.,
            Li,G., Mangino,M., McArdle,W.L., Medina-Gomez,C.,
            Muller-Nurasyid,M., Ngwa,J.S., Nolte,I.M., Paternoster,L.,
            Pechlivanis,S., Perola,M., Peters,M.J., Preuss,M., Rose,L.M.,
            Shi,J., Shungin,D., Smith,A.V., Strawbridge,R.J., Surakka,I.,
            Teumer,A., Trip,M.D., Tyrer,J., Van Vliet-Ostaptchouk,J.V.,
            Vandenput,L., Waite,L.L., Zhao,J.H., Absher,D., Asselbergs,F.W.,
            Atalay,M., Attwood,A.P., Balmforth,A.J., Basart,H., Beilby,J.,
            Bonnycastle,L.L., Brambilla,P., Bruinenberg,M., Campbell,H.,
            Chasman,D.I., Chines,P.S., Collins,F.S., Connell,J.M.,
            Cookson,W.O., de Faire,U., de Vegt,F., Dei,M., Dimitriou,M.,
            Edkins,S., Estrada,K., Evans,D.M., Farrall,M., Ferrario,M.M.,
            Ferrieres,J., Franke,L., Frau,F., Gejman,P.V., Grallert,H.,
            Gronberg,H., Gudnason,V., Hall,A.S., Hall,P., Hartikainen,A.L.,
            Hayward,C., Heard-Costa,N.L., Heath,A.C., Hebebrand,J., Homuth,G.,
            Hu,F.B., Hunt,S.E., Hypponen,E., Iribarren,C., Jacobs,K.B.,
            Jansson,J.O., Jula,A., Kahonen,M., Kathiresan,S., Kee,F.,
            Khaw,K.T., Kivimaki,M., Koenig,W., Kraja,A.T., Kumari,M.,
            Kuulasmaa,K., Kuusisto,J., Laitinen,J.H., Lakka,T.A.,
            Langenberg,C., Launer,L.J., Lind,L., Lindstrom,J., Liu,J.,
            Liuzzi,A., Lokki,M.L., Lorentzon,M., Madden,P.A., Magnusson,P.K.,
            Manunta,P., Marek,D., Marz,W., Mateo Leach,I., McKnight,B.,
            Medland,S.E., Mihailov,E., Milani,L., Montgomery,G.W., Mooser,V.,
            Muhleisen,T.W., Munroe,P.B., Musk,A.W., Narisu,N., Navis,G.,
            Nicholson,G., Nohr,E.A., Ong,K.K., Oostra,B.A., Palmer,C.N.,
            Palotie,A., Peden,J.F., Pedersen,N., Peters,A., Polasek,O.,
            Pouta,A., Pramstaller,P.P., Prokopenko,I., Putter,C.,
            Radhakrishnan,A., Raitakari,O., Rendon,A., Rivadeneira,F.,
            Rudan,I., Saaristo,T.E., Sambrook,J.G., Sanders,A.R., Sanna,S.,
            Saramies,J., Schipf,S., Schreiber,S., Schunkert,H., Shin,S.Y.,
            Signorini,S., Sinisalo,J., Skrobek,B., Soranzo,N., Stancakova,A.,
            Stark,K., Stephens,J.C., Stirrups,K., Stolk,R.P., Stumvoll,M.,
            Swift,A.J., Theodoraki,E.V., Thorand,B., Tregouet,D.A., Tremoli,E.,
            Van der Klauw,M.M., van Meurs,J.B., Vermeulen,S.H., Viikari,J.,
            Virtamo,J., Vitart,V., Waeber,G., Wang,Z., Widen,E., Wild,S.H.,
            Willemsen,G., Winkelmann,B.R., Witteman,J.C., Wolffenbuttel,B.H.,
            Wong,A., Wright,A.F., Zillikens,M.C., Amouyel,P., Boehm,B.O.,
            Boerwinkle,E., Boomsma,D.I., Caulfield,M.J., Chanock,S.J.,
            Cupples,L.A., Cusi,D., Dedoussis,G.V., Erdmann,J., Eriksson,J.G.,
            Franks,P.W., Froguel,P., Gieger,C., Gyllensten,U., Hamsten,A.,
            Harris,T.B., Hengstenberg,C., Hicks,A.A., Hingorani,A., Hinney,A.,
            Hofman,A., Hovingh,K.G., Hveem,K., Illig,T., Jarvelin,M.R.,
            Jockel,K.H., Keinanen-Kiukaanniemi,S.M., Kiemeney,L.A., Kuh,D.,
            Laakso,M., Lehtimaki,T., Levinson,D.F., Martin,N.G., Metspalu,A.,
            Morris,A.D., Nieminen,M.S., Njolstad,I., Ohlsson,C.,
            Oldehinkel,A.J., Ouwehand,W.H., Palmer,L.J., Penninx,B., Power,C.,
            Province,M.A., Psaty,B.M., Qi,L., Rauramaa,R., Ridker,P.M.,
            Ripatti,S., Salomaa,V., Samani,N.J., Snieder,H., Sorensen,T.I.,
            Spector,T.D., Stefansson,K., Tonjes,A., Tuomilehto,J.,
            Uitterlinden,A.G., Uusitupa,M., van der Harst,P., Vollenweider,P.,
            Wallaschofski,H., Wareham,N.J., Watkins,H., Wichmann,H.E.,
            Wilson,J.F., Abecasis,G.R., Assimes,T.L., Barroso,I., Boehnke,M.,
            Borecki,I.B., Deloukas,P., Fox,C.S., Frayling,T., Groop,L.C.,
            Haritunian,T., Heid,I.M., Hunter,D., Kaplan,R.C., Karpe,F.,
            Moffatt,M.F., Mohlke,K.L., O'Connell,J.R., Pawitan,Y., Schadt,E.E.,
            Schlessinger,D., Steinthorsdottir,V., Strachan,D.P.,
            Thorsteinsdottir,U., van Duijn,C.M., Visscher,P.M., Di Blasio,A.M.,
            Hirschhorn,J.N., Lindgren,C.M., Morris,A.P., Meyre,D., Scherag,A.,
            McCarthy,M.I., Speliotes,E.K., North,K.E., Loos,R.J. and
            Ingelsson,E.
  TITLE     Genome-wide meta-analysis identifies 11 new loci for anthropometric
            traits and provides insights into genetic architecture
  JOURNAL   Nat Genet 45 (5), 501-512 (2013)
   PUBMED   23563607
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC017104.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14243140.265354.1,
                                           SRR5189661.72763.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1968968
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-296               AC017104.8         122609-122904       c
            297-402             AC017104.8         122054-122159       c
            403-568             AC017104.8         117705-117870       c
            569-1686            AC017104.8         110614-111731       c
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /map="2q37.1"
     gene            1..1686
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /note="long intergenic non-protein coding RNA 471"
                     /db_xref="GeneID:151477"
                     /db_xref="HGNC:HGNC:28668"
     ncRNA           1..1686
                     /ncRNA_class="lncRNA"
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /product="long intergenic non-protein coding RNA 471,
                     transcript variant 3"
                     /db_xref="GeneID:151477"
                     /db_xref="HGNC:HGNC:28668"
     exon            1..296
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /inference="alignment:Splign:2.1.0"
     exon            297..402
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /inference="alignment:Splign:2.1.0"
     exon            403..568
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /inference="alignment:Splign:2.1.0"
     exon            569..1686
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1645..1650
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /note="hexamer: ATTAAA"
     polyA_site      1662
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /note="major polyA site"
     regulatory      1665..1670
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /note="hexamer: AATAAA"
     polyA_site      1686
                     /gene="LINC00471"
                     /gene_synonym="C2orf52"
                     /note="major polyA site"
ORIGIN      

gtcttccccgcgcgccttggatctggggcaatagctgagagggcgtcaccagcgtgtcggcgcctgcggttttcttcgggctgtccccaggcgtcgtgcccgcgtccgtcacgcgcggtggcttgcaggggcgcaccgcgacagccttaaaggaaaacctgttagggacaagggctgctgtgggcagcgagggttatagactcatgtgtgttctgaattctggtgggggtagtgatggacgctgacccagttcacagaattatctgactggcgaagtaaaggtacttgaattgcaggaaaaaaggtcaaggtgaactgaagaaaataagtctttccccaaaggaggtagaagatggggaagatgagatgtcagaagctaaggacaatggcagtagagatgaggttcttgtccctcataagaattgcaggaagaataccactgtcccgggaaagaaaggggaggaaaagtctctggctcctgtgtttgctgagaagttaatatcaccaagcaggaggggagccaagctcaaggaccgtgagagccaccaggagaatgaagacaggaacaatcaaaatgccaaaacacttttgatcaagaacctgcctgacaaagtcactccacatgaattaaaagaagtgtttgaggatgcttttcaaatcagattagtgagcaaagatgggatgagtaaaaagtatgttttgcacctcgtactgaataagaatgtatgtctactggatacaaacataatggaatttccttacattctctcaaatcttttatgcctgattttagagaaggaaagagtagttatccagatttctgccagtaggcataaaaagccaaaggggacatcataaagggacagccaaaactcctagaaaactgtagtggtgctatagagaaatagagacttcatctgctaccaagtacaagattgaagattggaatttattcatagattatgtacattctgtcttctctctccagggctgactccactagaataatgtacttagtaacttgcttggacaggtaccaaaatagcacatagaattgaattgttaggtttatgttgtaaccaattaatgaaacactgtccttagatatctaggctttggtagagtaagagagtgaatatggtgaaattagagagggtggagtataatatattttgaagggattgtcattgaggtgaaaattgagtattgggtttacagatacatttgagctaaatatgttggtgtaggtgaactctaaaataatctgtagcagtatgttctgatgaacataatctctagaaagaatactacagatcttcaagcataagatagaactgtatgtattgacctggaaagccatgataaatatgaggaaacaaatctgaaagaataaattccaaattgttagcagtgtttactaggaggagatttgggagcactctgcctatagtctccagaaaaccagcaaacaagttcctgccaaaagctatataatttctcgaagtttaattaggttttaattaaatatacttaaatctttgtaatcatttctctacctgaagaattactgtatcacttctcagccttttggctaagatcaagtgtagtatctgttttttcagtttaatatctgatatgtcctaaattaaaaataataaaaaataaataaaggggagataagagaaa

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