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2025-08-29 09:36:19, GGRNA.v2 : RefSeq release 231 (Jul, 2025)

LOCUS       NR_199405               1420 bp    rRNA    linear   BCT 28-APR-2025
DEFINITION  Afipia dichlorophenoxyacetatis strain DD3 16S ribosomal RNA,
            partial sequence.
ACCESSION   NR_199405
VERSION     NR_199405.1
DBLINK      Project: 33175
            BioProject: PRJNA33175
KEYWORDS    RefSeq.
SOURCE      Afipia dichlorophenoxyacetatis
  ORGANISM  Afipia dichlorophenoxyacetatis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Nitrobacteraceae; Afipia.
REFERENCE   1
  AUTHORS   Sawada,H., Sakai,Y., Takashima,Y., Naito,K., Horita,M. and Satou,M.
  TITLE     Afipia dichlorophenoxyacetatis sp. nov., isolated from field soil
            in Japan, degrades 2,4-dichlorophenoxyacetic acid
  JOURNAL   Int J Syst Evol Microbiol 75 (2) (2025)
   PUBMED   39928400
  REMARK    DOI:10.1099/ijsem.0.006672
REFERENCE   2  (bases 1 to 1420)
  CONSRTM   NCBI RefSeq Targeted Loci Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2025) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1420)
  AUTHORS   Sawada,H. and Satou,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2023) Contact:Hiroyuki Sawada National
            Agriculture and Food Research Organization, Research Center of
            Genetic Resources; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602,
            Japan URL
            :https://www.naro.go.jp/english/laboratory/ngrc/index.html
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to LC770309.1:1-1420.
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Afipia dichlorophenoxyacetatis"
                     /mol_type="rRNA"
                     /strain="DD3"
                     /isolation_source="field soil"
                     /culture_collection="MAFF:311804"
                     /type_material="type strain of Afipia
                     dichlorophenoxyacetatis"
                     /db_xref="taxon:3116917"
                     /geo_loc_name="Japan:Ibaraki"
                     /collection_date="2005-08"
                     /collected_by="Yoriko Sakai"
     rRNA            <1..>1420
                     /product="16S ribosomal RNA"
ORIGIN      
agcgaacgctggcggcaggcttaacacatgcaagtcgagcgggcgtagcaatacgtcagcggcagacgggtgagtaacgcgtgggaacgtaccttttggttcggaacaacacagggaaacttgtgctaataccgaataagcccttacggggaaagatttatcgccgaaagatcggcccgcgtctgattagctagttggtgaggtaacggctcaccaaggcgacgatcagtagctggtctgagaggatgatcagccacattgggactgagacacggcccaaactcctacgggaggcagcagtggggaatattggacaatgggcgcaagcctgatccagccatgccgcgtgagtgatgaaggccctagggttgtaaagctcttttgtgcgggaagataatgacggtaccgcaagaataagccccggctaacttcgtgccagcagccgcggtaatacgaagggggctagcgttgctcggaatcactgggcgtaaagggtgcgtaggcgggtctttaagtcaggggtgaaatcctggagctcaactccagaactgcctttgatactgaagatcttgagttcgggagaggtgagtggaactgcgagtgtagaggtgaaattcgtagatattcgcaagaacaccagtggcgaaggcggctcactggcccgatactgacgctgaggcacgaaagcgtggggagcaaacaggattagataccctggtagtccacgccgtaaacgatgaatgccagccgttggaaagtttacttttcagtggcgcagttaacgctttaagcattccgcctggggagtacggtcgcaagattaaaactcaaaggaattgacgggggcccgcacaagcggtggagcatgtggtttaattcgacgcaacgcgcagaaccttaccagcccttgacatcccggtcgcggtttccagagatggattccttcagttcggctggaccggtgacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccccgtccttagttgctaccatttagttgagcactctaaggagactgccggtgataagccgcgaggaaggtggggatgacgtcaagtcctcatggcccttacgggctgggctacacacgtgctacaatggcggtgacaatgggaagcaaaggcgcaagccctagcaaatctcaaaaagccgtctcagttcggattgggctctgcaactcgagcccatgaagttggaatcgctagtaatcgtggatcagcatgccacggtgaatacgttcccgggccttgtacacaccgcccgtcacaccatgggagttggttttacctgaagacggtgcgctaaccgaaagggggcagccggccacggtagggtcagcgactggggtgaagtcgtaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]