2025-08-29 09:36:18, GGRNA.v2 : RefSeq release 231 (Jul, 2025)
LOCUS NR_199402 1460 bp rRNA linear BCT 28-APR-2025 DEFINITION Acidovorax sacchari strain HC-19 16S ribosomal RNA, partial sequence. ACCESSION NR_199402 VERSION NR_199402.1 DBLINK Project: 33175 BioProject: PRJNA33175 KEYWORDS RefSeq. SOURCE Acidovorax sacchari ORGANISM Acidovorax sacchari Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax. REFERENCE 1 AUTHORS Sawada,H., Shinohara,H., Takashima,Y., Naito,K. and Satou,M. TITLE Acidovorax sacchari sp. nov., a pathogen causing red stripe of sugarcane in Japan JOURNAL Int J Syst Evol Microbiol 75 (2) (2025) PUBMED 39907557 REMARK DOI:10.1099/ijsem.0.006575 REFERENCE 2 (bases 1 to 1460) CONSRTM NCBI RefSeq Targeted Loci Project TITLE Direct Submission JOURNAL Submitted (24-APR-2025) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1460) AUTHORS Sawada,H. and Takashima,Y. TITLE Direct Submission JOURNAL Submitted (31-JAN-2024) Contact:Hiroyuki Sawada National Agriculture and Food Research Organization, Research Center of Genetic Resources; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan URL :https://www.naro.go.jp/english/laboratory/ngrc/index.html COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to LC797516.1:1-1460. FEATURES Location/Qualifiers source 1..1460 /organism="Acidovorax sacchari" /mol_type="rRNA" /strain="HC-19" /isolation_source="leaf of sugar cane" /host="Saccharum officinarum" /culture_collection="MAFF:311311" /type_material="type strain of Acidovorax sacchari" /db_xref="taxon:3230736" /geo_loc_name="Japan:Okinawa" /collection_date="2001-11" /collected_by="Hirosuke Shinohara" rRNA <1..>1460 /product="16S ribosomal RNA" ORIGIN
attgaacgctggcggcatgccttacacatgcaagtcgaacggtaacaggtcttcggatgctgacgagtggcgaacgggtgagtaatacatcggaacgtgcccgatcgtgggggataacgaggcgaaagctttgctaataccgcataagatctatggatgaaagcaggggaccgcaaggccttgcgcgaacggagcggccgatggcagattaggtagttggtggggtaaaggcttaccaagcctacgatctgtagctggtctgagaggacgaccagccacactgggactgagacacggcccagactcctacgggaggcagcagtggggaattttggacaatgggcgcaagcctgatccagccatgccgcgtgcaggatgaaggccttcgggttgtaaactgcttttgtacggaacgaaaagccttcttctaataaagggaggtcatgacggtaccgtaagaataagcaccggctaactacgtgccagcagccgcggtaatacgtagggtgcaagcgttaatcggaattactgggcgtaaagcgtgcgcaggcggtgatgtaagacagatgtgaaatccccgggctcaacctgggaactgcatttgtgactgcatcgctggagtacggcagagggggatggaattccgcgtgtagcagtgaaatgcgtagatatgcggaggaacaccgatggcgaaggcaatcccctgggcctgtactgacgctcatgcacgaaagcgtggggagcaaacaggattagataccctggtagtccacgccctaaacgatgtcaactggttgttgggtcttcactgactcagtaacgaagctaacgcgtgaagttgaccgcctggggagtacggccgcaaggttgaaactcaaaggaattgacggggacccgcacaagcggtggatgatgtggtttaattcgatgcaacgcgaaaaaccttacccacctttgacatgtacggaatcctttagagatagaggagtgctcgaaagagaaccgtaacacaggtgctgcatggctgtcgtcagctcgtgtcgtgagatgttgggttaagtcccgcaacgagcgcaacccttgccattagttgctacgaaagggcactctaatgggactgccggtgacaaaccggaggaaggtggggatgacgtcaagtcctcatggcccttataggtggggctacacacgtcatacaatggctggtacagagggttgccaacccgcgagggggagctaatcccataaagccagtcgtagtccggatcgcagtctgcaactcgactgcgtgaagtcggaatcgctagtaatcgcggatcagaatgtcgcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccatgggagcgggttctgccagaagtaggtagcctaaccgtaaggagggcgcttaccacggcagggttcgtgactggggtgaagtcgtaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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