2024-05-06 10:03:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_188524 2399 bp RNA linear PRI 22-SEP-2023 DEFINITION Homo sapiens chromosome 7 open reading frame 50 (C7orf50), transcript variant 22, non-coding RNA. ACCESSION NR_188524 VERSION NR_188524.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2399) AUTHORS Haenig C, Atias N, Taylor AK, Mazza A, Schaefer MH, Russ J, Riechers SP, Jain S, Coughlin M, Fontaine JF, Freibaum BD, Brusendorf L, Zenkner M, Porras P, Stroedicke M, Schnoegl S, Arnsburg K, Boeddrich A, Pigazzini L, Heutink P, Taylor JP, Kirstein J, Andrade-Navarro MA, Sharan R and Wanker EE. TITLE Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains JOURNAL Cell Rep 32 (7), 108050 (2020) PUBMED 32814053 REFERENCE 2 (bases 1 to 2399) AUTHORS Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG, Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF, Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC, Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A, Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG, Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S, Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A, Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S, Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V, Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X, Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP and Calderwood MA. TITLE A reference map of the human binary protein interactome JOURNAL Nature 580 (7803), 402-408 (2020) PUBMED 32296183 REFERENCE 3 (bases 1 to 2399) AUTHORS Meeks KAC, Henneman P, Venema A, Addo J, Bahendeka S, Burr T, Danquah I, Galbete C, Mannens MMAM, Mockenhaupt FP, Owusu-Dabo E, Rotimi CN, Schulze MB, Smeeth L, Spranger J, Zafarmand MH, Adeyemo A and Agyemang C. TITLE Epigenome-wide association study in whole blood on type 2 diabetes among sub-Saharan African individuals: findings from the RODAM study JOURNAL Int J Epidemiol 48 (1), 58-70 (2019) PUBMED 30107520 REMARK GeneRIF: Three ubiquitous methylation loci were consistently and strongly associated with type 2 diabetes in Ghanaians: TXNIP, C7orf50 and CPT1A REFERENCE 4 (bases 1 to 2399) AUTHORS Willer CJ, Schmidt EM, Sengupta S, Peloso GM, Gustafsson S, Kanoni S, Ganna A, Chen J, Buchkovich ML, Mora S, Beckmann JS, Bragg-Gresham JL, Chang HY, Demirkan A, Den Hertog HM, Do R, Donnelly LA, Ehret GB, Esko T, Feitosa MF, Ferreira T, Fischer K, Fontanillas P, Fraser RM, Freitag DF, Gurdasani D, Heikkila K, Hypponen E, Isaacs A, Jackson AU, Johansson A, Johnson T, Kaakinen M, Kettunen J, Kleber ME, Li X, Luan J, Lyytikainen LP, Magnusson PKE, Mangino M, Mihailov E, Montasser ME, Muller-Nurasyid M, Nolte IM, O'Connell JR, Palmer CD, Perola M, Petersen AK, Sanna S, Saxena R, Service SK, Shah S, Shungin D, Sidore C, Song C, Strawbridge RJ, Surakka I, Tanaka T, Teslovich TM, Thorleifsson G, Van den Herik EG, Voight BF, Volcik KA, Waite LL, Wong A, Wu Y, Zhang W, Absher D, Asiki G, Barroso I, Been LF, Bolton JL, Bonnycastle LL, Brambilla P, Burnett MS, Cesana G, Dimitriou M, Doney ASF, Doring A, Elliott P, Epstein SE, Ingi Eyjolfsson G, Gigante B, Goodarzi MO, Grallert H, Gravito ML, Groves CJ, Hallmans G, Hartikainen AL, Hayward C, Hernandez D, Hicks AA, Holm H, Hung YJ, Illig T, Jones MR, Kaleebu P, Kastelein JJP, Khaw KT, Kim E, Klopp N, Komulainen P, Kumari M, Langenberg C, Lehtimaki T, Lin SY, Lindstrom J, Loos RJF, Mach F, McArdle WL, Meisinger C, Mitchell BD, Muller G, Nagaraja R, Narisu N, Nieminen TVM, Nsubuga RN, Olafsson I, Ong KK, Palotie A, Papamarkou T, Pomilla C, Pouta A, Rader DJ, Reilly MP, Ridker PM, Rivadeneira F, Rudan I, Ruokonen A, Samani N, Scharnagl H, Seeley J, Silander K, Stancakova A, Stirrups K, Swift AJ, Tiret L, Uitterlinden AG, van Pelt LJ, Vedantam S, Wainwright N, Wijmenga C, Wild SH, Willemsen G, Wilsgaard T, Wilson JF, Young EH, Zhao JH, Adair LS, Arveiler D, Assimes TL, Bandinelli S, Bennett F, Bochud M, Boehm BO, Boomsma DI, Borecki IB, Bornstein SR, Bovet P, Burnier M, Campbell H, Chakravarti A, Chambers JC, Chen YI, Collins FS, Cooper RS, Danesh J, Dedoussis G, de Faire U, Feranil AB, Ferrieres J, Ferrucci L, Freimer NB, Gieger C, Groop LC, Gudnason V, Gyllensten U, Hamsten A, Harris TB, Hingorani A, Hirschhorn JN, Hofman A, Hovingh GK, Hsiung CA, Humphries SE, Hunt SC, Hveem K, Iribarren C, Jarvelin MR, Jula A, Kahonen M, Kaprio J, Kesaniemi A, Kivimaki M, Kooner JS, Koudstaal PJ, Krauss RM, Kuh D, Kuusisto J, Kyvik KO, Laakso M, Lakka TA, Lind L, Lindgren CM, Martin NG, Marz W, McCarthy MI, McKenzie CA, Meneton P, Metspalu A, Moilanen L, Morris AD, Munroe PB, Njolstad I, Pedersen NL, Power C, Pramstaller PP, Price JF, Psaty BM, Quertermous T, Rauramaa R, Saleheen D, Salomaa V, Sanghera DK, Saramies J, Schwarz PEH, Sheu WH, Shuldiner AR, Siegbahn A, Spector TD, Stefansson K, Strachan DP, Tayo BO, Tremoli E, Tuomilehto J, Uusitupa M, van Duijn CM, Vollenweider P, Wallentin L, Wareham NJ, Whitfield JB, Wolffenbuttel BHR, Ordovas JM, Boerwinkle E, Palmer CNA, Thorsteinsdottir U, Chasman DI, Rotter JI, Franks PW, Ripatti S, Cupples LA, Sandhu MS, Rich SS, Boehnke M, Deloukas P, Kathiresan S, Mohlke KL, Ingelsson E and Abecasis GR. CONSRTM Global Lipids Genetics Consortium TITLE Discovery and refinement of loci associated with lipid levels JOURNAL Nat Genet 45 (11), 1274-1283 (2013) PUBMED 24097068 REFERENCE 5 (bases 1 to 2399) AUTHORS Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and Hentze MW. TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding proteins JOURNAL Cell 149 (6), 1393-1406 (2012) PUBMED 22658674 REFERENCE 6 (bases 1 to 2399) AUTHORS Yashin AI, Wu D, Arbeev KG and Ukraintseva SV. TITLE Joint influence of small-effect genetic variants on human longevity JOURNAL Aging (Albany NY) 2 (9), 612-620 (2010) PUBMED 20834067 REFERENCE 7 (bases 1 to 2399) AUTHORS Satoh J, Obayashi S, Misawa T, Sumiyoshi K, Oosumi K and Tabunoki H. TITLE Protein microarray analysis identifies human cellular prion protein interactors JOURNAL Neuropathol Appl Neurobiol 35 (1), 16-35 (2009) PUBMED 18482256 REFERENCE 8 (bases 1 to 2399) AUTHORS Oh JH, Yang JO, Hahn Y, Kim MR, Byun SS, Jeon YJ, Kim JM, Song KS, Noh SM, Kim S, Yoo HS, Kim YS and Kim NS. TITLE Transcriptome analysis of human gastric cancer JOURNAL Mamm Genome 16 (12), 942-954 (2005) PUBMED 16341674 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC073957.7. ##Evidence-Data-START## Transcript exon combination :: SRR18074968.3093076.1, SRR14038193.4078868.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA1968540, SAMEA1968832 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-112 AC073957.7 149318-149429 c 113-343 AC073957.7 142421-142651 c 344-1288 AC073957.7 140384-141328 c 1289-2399 AC073957.7 138980-140090 c FEATURES Location/Qualifiers source 1..2399 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="7" /map="7p22.3" gene 1..2399 /gene="C7orf50" /gene_synonym="YCR016W" /note="chromosome 7 open reading frame 50" /db_xref="GeneID:84310" /db_xref="HGNC:HGNC:22421" misc_RNA 1..2399 /gene="C7orf50" /gene_synonym="YCR016W" /product="chromosome 7 open reading frame 50, transcript variant 22" /db_xref="GeneID:84310" /db_xref="HGNC:HGNC:22421" exon 1..112 /gene="C7orf50" /gene_synonym="YCR016W" /inference="alignment:Splign:2.1.0" exon 113..343 /gene="C7orf50" /gene_synonym="YCR016W" /inference="alignment:Splign:2.1.0" misc_feature 257..688 /gene="C7orf50" /gene_synonym="YCR016W" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001350969.2" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 344..1288 /gene="C7orf50" /gene_synonym="YCR016W" /inference="alignment:Splign:2.1.0" exon 1289..2399 /gene="C7orf50" /gene_synonym="YCR016W" /inference="alignment:Splign:2.1.0" regulatory 2380..2385 /regulatory_class="polyA_signal_sequence" /gene="C7orf50" /gene_synonym="YCR016W" /note="hexamer: AATAAA" polyA_site 2399 /gene="C7orf50" /gene_synonym="YCR016W" /note="major polyA site" ORIGIN
gcagtgtggaggcgctgaggctgctggaggcgcgggccgggcggtgcgcactgcgggcgcatccctgccccggcgccgtccgtgcccgcgggacctgacagccgggtcagagcatggggaaatgattgatgactgacagctgctgaagccctactcctgtgcggtggatggacagtgctccctggggtcccagctccaactactggcatcttgtcaaagcagcagcccaggtggccaccactgccgatcagacttaatggatgaagacaggaaggctgggcagagcccttcagcttccgactctggttcagtcactgaaatccgcaatatcatctctgtcaagggagccccaggagggcagaggctgcagcgcgtgttcacaggacgggagcatgagggaatgcactccgcggcgtgggaagaaacagtcgtggggaccagggcatcgcacgcggggcctgccgcatccatgcactgctgggcctggtgcccgtgttcccgcagagcagcagacaccaccactccgccggcccttggatctctcctcagtgggaagagaggctggggacgggccggccacctgccgcctcgctggacttctgccctgggattcctgagacgagagccgagcgtcctaagctgccctcgtccaggtgccccgtggcctccctcgggaaacgcactgtagcttggcctccgggccgcggtcagtgcctgcgggcctctgggtccaggctgtgggaactgtccacttcctgggagggcaggagtgagagacctgagtgggtgaccccaggcagccccagccccccacactccatcaggagaagaggggtcagggccacagccaaccagtctccgcttcctgcttgcttcccaccgcctctgcccatctggaagccctggctgcagtgggggccctcctcgtggtgatgggcctggaggttcttggcggccactggagcttcctgcagccactaggcctgcgcagcctcccctctgcccacagggcagccccacggccacctccgctctgtggtttgccttcttggactcagggcttcactgttttgaaaagcccgggtgctgcagtgaggaccccgctccgcatttctgccgggagctgtgagcagccaggccagcctcctcacggtgccaggaagcctctccttctggcccagagcagcagctgccccttccagcattgaccgtgggtgatcaacaacctggcatgggggcaggattttccctatagaaccattgaacaacacggacctgtcagctcaagtagagacggggtttcaccatgttggccaggctggtctcggactcctgactcagatgatccacccacctcggccaccacgcccggaccactccccagttcttgacaagtctgcagttcctgcactgtcctagactatggaacacctgggagggacagagagcttgtcctgggaccaccagctggacgagcctatcacccacccccgaggtagaagacctggggcgcagccctgatctattgatttttttttttgagggtctcactctcatccaggctggggtacagtggtgtgatcacagctcactgcagtctcgaattcctgggctcaagccagcctcccaccttggcctcccaaagcactcagattaacatgtgtgagccagtgcacctgagctccaccctgatttacataaagaccacactctgggctggaccccacccgcccgcgtgcacacctcagctggagcccacgccaggtgcctgctcccactgggcaggaagtgcggacctccgagaggcacaggctgggcctgctggccatgggtgtgcccatcacgactccctcgtcatgtctcctcatcacatctcctctctgctcggggccaggctctgagacgccacaggctgatggccggagccaggcggactttgagtctgggtctgagatggctccacgtgtacaatgcacactggtttcaaagctgtggagtgagaagaaagacgtgctttcgttagtcactttttatatgggttacctgttgaaggggcaaccccctgttcctgtagggcctcggctctcacttcctgacttggaccccacccgccaagccctagtgtgcgtgtcctgggcctgtgcttcctgcctggtgggagctggtgcttagccagggctcaatggagagagcagagatgatggcaggggtatgtgtgcacgcgtgtgtatgcgtgctcgtgtgagtggggatttctgcctagggtgtgggaacgtctgagccccgtggggactttgggtcattatttaaatttgggctaagttctactaggtcttctgtcacctgctggagttattttctttctgccacattttagaaaataaaatgcaccgaacaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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