LOCUS       NR_184168               1189 bp    RNA     linear   PRI 01-JUN-2023
DEFINITION  Homo sapiens MAP3K9 divergent transcript (MAP3K9-DT), transcript
            variant 6, long non-coding RNA.
ACCESSION   NR_184168
VERSION     NR_184168.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1189)
  AUTHORS   Ota K, Sakai S, Ohhata T, Suzuki T, Uchida C, Niida H and Kitagawa
            M.
  TITLE     APOBEC3B expression is promoted by lincNMR collaborating with
            TGF-beta-Smad pathway
  JOURNAL   Carcinogenesis 44 (1), 1-14 (2023)
   PUBMED   36335471
  REMARK    GeneRIF: APOBEC3B expression is promoted by lincNMR collaborating
            with TGF-beta-Smad pathway.
REFERENCE   2  (bases 1 to 1189)
  AUTHORS   Gandhi M, Gross M, Holler JM, Coggins SA, Patil N, Leupold JH,
            Munschauer M, Schenone M, Hartigan CR, Allgayer H, Kim B and
            Diederichs S.
  TITLE     The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 -
            RRM2 axis in cancer
  JOURNAL   Nat Commun 11 (1), 3214 (2020)
   PUBMED   32587247
  REMARK    GeneRIF: The lncRNA lincNMR regulates nucleotide metabolism via a
            YBX1 - RRM2 axis in cancer.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC004816.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14372080.75958.1,
                                           SRR5189661.186477.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1965299, SAMEA1970526
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                AC004816.1         17434-17473         c
            41-251              AC004816.1         17082-17292         c
            252-1189            AC004816.1         11325-12262         c
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="14"
                     /map="14q24.2"
     gene            1..1189
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /note="MAP3K9 divergent transcript"
                     /db_xref="GeneID:100506411"
                     /db_xref="HGNC:HGNC:53189"
     ncRNA           1..1189
                     /ncRNA_class="lncRNA"
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /product="MAP3K9 divergent transcript, transcript variant
                     6"
                     /db_xref="GeneID:100506411"
                     /db_xref="HGNC:HGNC:53189"
     exon            1..40
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /inference="alignment:Splign:2.1.0"
     exon            41..251
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /inference="alignment:Splign:2.1.0"
     exon            252..1189
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /inference="alignment:Splign:2.1.0"
     regulatory      509..514
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /note="hexamer: AATAAA"
     polyA_site      537
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /note="major polyA site"
     regulatory      1166..1171
                     /regulatory_class="polyA_signal_sequence"
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
                     /note="hexamer: AGTAAA"
     polyA_site      1189
                     /gene="MAP3K9-DT"
                     /gene_synonym="lincNMR"
ORIGIN      

ctcattgggtgcgtgagaagggaagggtggatcctaaaagatcccttttacagttggattctccctcttggatctggctctgccttagtccgacctagagggatcagcttcgcccacgcccactctcacccggaacctttcatctcttattgaagccttttaggcccattgggatgttcattagaactctgaaaactacagttctcccctttatgaggactgcaccacagctcgccctctcctgggttccgcctggttgcagagtgagcccatgggacagccctctgaaattatactgcttacaaccatgctgagtctgcaaggacttcgtccaagcctttccgtccaggacctcaaacagatccaatcacaagaagagagatttcaggaaagagaaaattattcctatcatcggggtttttgaagaacatgaaatgactgggaaaataatcatgttaagtggaaaaaaaaaagaaatctatctgttgtaattttcaaataatttttaaataaatttgaaaaattaagagaactatatatataatacattcctaatcttgtgaaaaatatatatgcattaatattattgaaagaaatatatcaaaaggtgaacagcaattatcaccaatctagattatgagattaggagtgattttttttctttgtcctatactatttaatattttctaccattaaaatattctgattttctaattagaatagtacgttagacaaagaaggacaaatatcacatgaactctcactctcttatggaacagatcttgtggaatctaaaaaagttgaactcatagaaaaagaggaaaatgatggttaccagttagaaaaaaggaataagttcaagagatctattgtacaccatggtcaatatagttaacaatatattttatactttaaaattgctaaggtagtagattttaagtgttctcaccacacaaaaaaataagtatgtgaaaagcatatggtaattagcttgatttaaccacgccacagtgcatacatatgtcaaaacatcatgttgtatactataaatatatacactttttgtcaattttaaacaggttataaaaaaacatgttattgttgataattatgaaaaattttaatgatgtggaaatgtgtacagtataatgataaatgaaagagtagtaaaaatccttataaaatataa

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