LOCUS       NR_165170               2420 bp    RNA     linear   ROD 14-OCT-2020
DEFINITION  Mus musculus RIKEN cDNA 6430573P05 gene (6430573P05Rik), transcript
            variant 3, long non-coding RNA.
ACCESSION   NR_165170
VERSION     NR_165170.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 2420)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   4  (bases 1 to 2420)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5  (bases 1 to 2420)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   6  (bases 1 to 2420)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   7  (bases 1 to 2420)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157941.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363660.2977364.1,
                                           SRR11927934.3345082.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849379
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-955               AC157941.4         192370-193324
            956-2420            AC157941.4         193894-195358
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3"
     gene            1..2420
                     /gene="6430573P05Rik"
                     /gene_synonym="Gm1648"
                     /note="RIKEN cDNA 6430573P05 gene"
                     /db_xref="GeneID:115489693"
                     /db_xref="MGI:MGI:2686494"
     ncRNA           1..2420
                     /ncRNA_class="lncRNA"
                     /gene="6430573P05Rik"
                     /gene_synonym="Gm1648"
                     /product="RIKEN cDNA 6430573P05 gene, transcript variant
                     3"
                     /db_xref="GeneID:115489693"
                     /db_xref="MGI:MGI:2686494"
     exon            1..955
                     /gene="6430573P05Rik"
                     /gene_synonym="Gm1648"
                     /inference="alignment:Splign:2.1.0"
     exon            956..2420
                     /gene="6430573P05Rik"
                     /gene_synonym="Gm1648"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gacgcgtcccgggtcctcgcgcgccggtcgagagggagggccgcgcgctgagcctggtgagcccggctcaggtctgggagccaccgagcccgctggcctcggccgccgtggccgcgccgcgcctccgtctactgtcggccgcgcctcccgactgctgctgcatccccgcgggccgcgcagctccagccgcccgcccccatcggcgcctgagcgcggctgctccccgcgcggcccccgcgctctaggcaactttgtgcgtcgtccgtgcggcgggcgggcgcggcgggccagacacgggtccccggcgggcgcgaggccgagagcggagcgcgcagccccgccaagcgtctgctgaacggcgaccgcctcctcttccccgcctcttccttctcctgcgcctcggcggccgccggagccactcttcagggaggaagcggcctccggggcttgttgctttgtgctgcaaccatggtgaggagtgagtgacgggccgggggccagtcggaggccgccgcatcatcgggggcggagcgccccgtggcgccggcccgccccatcgctggcctggcggggccgcgccctcgctgagagccgcgttctgccggggccaggtgcggtgggagccaggacagccggggctgttgcgatcgttgatcccatagctgagcggccgcaccccgactctctggcctagaccccacatcccaggccttgcggcacgtctcccgcctcttcccgggctggaagctgaccccacccgggagaggtccctgtgaggactcggctgcagtggcaggtcttcccaaagcttagggctgactgggattttgcttcggtggcaacattaaccatccttggattctgtttatttgtagtgactgcaaggacaacgttgctctcctaccttccgcgctcactgacatctaaacccttaaatgactcctgcgttagtcagcaactgcttcctgctttatctgaagtcctagagcagcaacttgaattctccaggctaaacctccacttcaaaagcaaaataacagaaaaagagaattttaaacccaatgatctgcaaaatacatatacccgacattccccatttggagtctatgcgacatttcagagtgtgtgtgtacaaatctggttccacttttcttgtcccaaacatcccccatccacagccttaaatgtcccaattaataagacaccattatcaccatccaggttccccagggttcatcctagtatcttcttaatttctttctcctctatgcaacaaagtttggtacagccttctacctcaactttcaaagttctaatagatgtgtattccagtccctaccacctttcctacagtgatcatggtccaaagcactacaaccctctgattgcatttttctatagttatatccctagtaccctttttctttctttccttcttcctttctttcttcctttctttctttctttctttcttccttccctcctttcttgtttctttgtttcttgtttatttgttagtttgttttcctctgagtagcccattctcatgacagcagccggtgtaaatgtgctcccgtgagtcactgcttatcttccatgacattcatcccacaagcctagaactctgtggcctcaatgacccctgaacctagtcctccaacctgtgacctcttctgacctactctcatatccactatgttccctactcagttcctcaggcacacgagcttccatgctgtttctaaagaaataaagcaaatgtggatctcctggccttccatctgctgttccttctactgctgtgttggctctacctttccccttccacccacggaagaaaaagaaaacatatgtaacagatggaatgctgctttccacctcctttgctcttctctcatctttattcaaatatcatcttccccatggttgcgtagcctaccttcctggctttatttaacacctaacctgcatattgtattttactcattttgtattttcttactccactgtaatgtcagctgtgcacgtcaatgatttttattttgttgacctctataccaactagtattattggatggatactcgaattactcaaataccttatagttgtatgatatatattattatcacacctatatggtgggaaaaaggaagttgcaagaggacacacaagcccactaagcctgtcttctgtcctacagaaagaatgcatttacttcgtgctgaagatttgcaagtatcaaatacaacacatgcaaagatgttgcacagtgcttgagccatagtatgaactcaacaaatagttgttatttttaagatcatattcgtcatccccaccctttgaggtttgtggacagttattatcatcctgtttacagatggggaaactggcaataaagtgggctgtgtgatttgcccta

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