2024-04-24 11:35:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_214121 915 bp mRNA linear MAM 16-FEB-2022 DEFINITION Sus scrofa mesenchyme homeobox 2 (MEOX2), mRNA. ACCESSION NM_214121 VERSION NM_214121.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 915) AUTHORS Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences JOURNAL Nucleic Acids Res. 35 (Database issue), D650-D653 (2007) PUBMED 17145712 REFERENCE 2 (bases 1 to 915) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries JOURNAL Nucleic Acids Res. 32 (Database issue), D484-D488 (2004) PUBMED 14681463 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF295686.1. ##Evidence-Data-START## Transcript exon combination :: AF295686.1, SRR5275321.236167.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886127, SAMEA103886166 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..915 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="9" /map="9" gene 1..915 /gene="MEOX2" /gene_synonym="GAX" /note="mesenchyme homeobox 2" /db_xref="GeneID:397222" /db_xref="VGNC:VGNC:90142" exon 1..517 /gene="MEOX2" /gene_synonym="GAX" /inference="alignment:Splign:2.1.0" CDS 4..915 /gene="MEOX2" /gene_synonym="GAX" /note="growth arrest homeobox transcription factor GAX" /codon_start=1 /product="homeobox protein MOX-2" /protein_id="NP_999286.1" /db_xref="GeneID:397222" /db_xref="VGNC:VGNC:90142" /translation="
MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACPPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYELAVNLDLTERQVKVWLQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDPLANEDSHDSDHSSEHAHL"
misc_feature 478..852 /gene="MEOX2" /gene_synonym="GAX" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(562..576,580..582,631..633,649..651,688..690, 694..699,706..711,715..723,727..732) /gene="MEOX2" /gene_synonym="GAX" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(568..570,577..579,697..699,706..711,718..720) /gene="MEOX2" /gene_synonym="GAX" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 571..729 /gene="MEOX2" /gene_synonym="GAX" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 518..690 /gene="MEOX2" /gene_synonym="GAX" /inference="alignment:Splign:2.1.0" exon 691..915 /gene="MEOX2" /gene_synonym="GAX" /inference="alignment:Splign:2.1.0" ORIGIN
gctatggaacacccgctctttggctgtctgcgcagccctcacgccaccgcgcaaggcttgcacccgttctcccagtcctctctcgccctccatggaagatctgaccatatgtcctaccctgagctctccacttcttcctcgtcttgcataatcgcgggataccccaacgaggagggcatgtttgccagccagcatcacagggggcaccaccaccaccatcaccatcaccaccatcaccaccagcagcagcagcaccaagctctgcaaaccaactggcacctcccgcagatgtcctcccccccgagtgcggctcggcacagcctctgcctccagccggactcgggagggcccccggagctgggaagcagtccaccggtcctgtgttccaactcttccagcttgggctccagcaccccgaccggggccgcgtgcccgccaggggactacggccgtcaggcgttgtcacccgcggaggcggagaagagaagcgggggcaagaggaaaagcgatagctcagactcccaggaaggaaattacaagtcagaagtcaatagcaaacccaggaaggaaaggacagcttttactaaagagcaaatcagagaacttgaagcagaatttgcccatcataattatctgaccagactgaggcgatatgaactagcagtgaacttggatctcactgaaagacaggtgaaagtctggctccaaaacaggcgaatgaagtggaagagagtaaaaggaggacagcaaggagctgcggctcgagaaaaggaactggtgaatgtgaaaaaggggacacttctcccttcagagctctcgggaattggtgcagccactctccagcaaacaggggaccctctagcaaatgaagacagccatgacagtgatcacagctcagagcacgcccacctctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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