ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-09-16 22:23:28, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS NM_203359 6300 bp mRNA linear MAM 28-JUN-2025 DEFINITION Bos taurus dicer 1, ribonuclease III (DICER1), transcript variant 1, mRNA. ACCESSION NM_203359 VERSION NM_203359.2 KEYWORDS RefSeq. SOURCE Bos taurus (domestic cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 6300) AUTHORS Burrola-Barraza,M.E., Hernandez-Seanez,R., Barcelo-Fimbres,M., Rodriguez-Almeida,F.A., Gonzalez-Rodriguez,E., Garcia-Quinonez,S., Grado-Ahuir,J.A. and Moreno-Brito,V. TITLE Dicer gene expression during early bovine embryo development JOURNAL Mol Reprod Dev 78 (9), 622 (2011) PUBMED 21823189 REMARK GeneRIF: Studied Dicer gene expression during early bovine embryo development.An increase in Dicer expression was detected in the mature oocytes sampled (P<0.05), implying that gene repression occurs during meiosis II. REFERENCE 2 (bases 1 to 6300) AUTHORS Zimin,A.V., Delcher,A.L., Florea,L., Kelley,D.R., Schatz,M.C., Puiu,D., Hanrahan,F., Pertea,G., Van Tassell,C.P., Sonstegard,T.S., Marcais,G., Roberts,M., Subramanian,P., Yorke,J.A. and Salzberg,S.L. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol 10 (4), R42 (2009) PUBMED 19393038 REFERENCE 3 (bases 1 to 6300) AUTHORS Ishiwata,H., Katsuma,S., Kizaki,K., Patel,O.V., Nakano,H., Takahashi,T., Imai,K., Hirasawa,A., Shiojima,S., Ikawa,H., Suzuki,Y., Tsujimoto,G., Izaike,Y., Todoroki,J. and Hashizume,K. TITLE Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray JOURNAL Mol Reprod Dev 65 (1), 9-18 (2003) PUBMED 12658628 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NKLS02000021.1. On Dec 10, 2024 this sequence version replaced NM_203359.1. ##Evidence-Data-START## Transcript exon combination :: GGVG01110259.1, GGVG01110293.1 [ECO:0000332] RNAseq introns :: partial sample support SAMEA6648753, SAMEA6648754 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-140 NKLS02000021.1 60027293-60027432 c 141-204 NKLS02000021.1 60004619-60004682 c 205-305 NKLS02000021.1 60003478-60003578 c 306-494 NKLS02000021.1 59999254-59999442 c 495-657 NKLS02000021.1 59998291-59998453 c 658-788 NKLS02000021.1 59997182-59997312 c 789-923 NKLS02000021.1 59995327-59995461 c 924-1084 NKLS02000021.1 59994718-59994878 c 1085-1253 NKLS02000021.1 59992394-59992562 c 1254-1726 NKLS02000021.1 59990633-59991105 c 1727-1859 NKLS02000021.1 59983033-59983165 c 1860-2102 NKLS02000021.1 59981525-59981767 c 2103-2254 NKLS02000021.1 59980839-59980990 c 2255-2387 NKLS02000021.1 59978157-59978289 c 2388-2463 NKLS02000021.1 59977416-59977491 c 2464-2603 NKLS02000021.1 59976592-59976731 c 2604-2783 NKLS02000021.1 59974547-59974726 c 2784-2997 NKLS02000021.1 59974100-59974313 c 2998-3151 NKLS02000021.1 59973744-59973897 c 3152-3334 NKLS02000021.1 59972111-59972293 c 3335-3440 NKLS02000021.1 59971739-59971844 c 3441-3616 NKLS02000021.1 59971055-59971230 c 3617-4400 NKLS02000021.1 59969311-59970094 c 4401-4556 NKLS02000021.1 59966408-59966563 c 4557-5445 NKLS02000021.1 59962523-59963411 c 5446-5714 NKLS02000021.1 59960562-59960830 c 5715-5877 NKLS02000021.1 59957160-59957322 c 5878-5953 NKLS02000021.1 59956978-59957053 c 5954-6300 NKLS02000021.1 59956306-59956652 c FEATURES Location/Qualifiers source 1..6300 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="21" /map="21" /breed="Hereford" gene 1..6300 /gene="DICER1" /gene_synonym="Dicer" /note="dicer 1, ribonuclease III" /db_xref="BGD:BT29583" /db_xref="GeneID:337871" /db_xref="VGNC:VGNC:28063" exon 1..140 /gene="DICER1" /gene_synonym="Dicer" /inference="alignment:Splign:2.1.0" exon 141..204 /gene="DICER1" /gene_synonym="Dicer" /inference="alignment:Splign:2.1.0" exon 205..305 /gene="DICER1" /gene_synonym="Dicer" /inference="alignment:Splign:2.1.0" exon 306..494 /gene="DICER1" /gene_synonym="Dicer" /inference="alignment:Splign:2.1.0" misc_feature 348..350 /gene="DICER1" /gene_synonym="Dicer" /note="upstream in-frame stop codon" CDS 351..6119 /gene="DICER1" /gene_synonym="Dicer" /EC_number="3.1.26.3" /note="Dicer1, Dcr-1 homolog; dicer 1, ribonuclease type III; ribonuclease III" /codon_start=1 /product="endoribonuclease Dicer" /protein_id="NP_976235.2" /db_xref="BGD:BT29583" /db_xref="GeneID:337871" /db_xref="VGNC:VGNC:28063" /translation="
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISIANSSSAENENYCKHSTIVVPENAAHQGANRTSPLENHDQMSVNCRTLFSESPGKLQIEVSTDLTAINGLSYNKSLANGSYDLANRDFCQGNHLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSATDSAYEWKMPKKSSLGSLPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 474..1067
/gene="DICER1"
/gene_synonym="Dicer"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(474..485,492..494,543..566,687..689,876..878,
969..971)
/gene="DICER1"
/gene_synonym="Dicer"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350792"
misc_feature order(651..656,723..728,801..803,807..812,819..821,
894..902)
/gene="DICER1"
/gene_synonym="Dicer"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 873..884
/gene="DICER1"
/gene_synonym="Dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3);
Region: DECH box"
misc_feature 1116..2135
/gene="DICER1"
/gene_synonym="Dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3);
Region: Required for interaction with PRKRA and TARBP2.
/evidence=ECO:0000250"
misc_feature 1161..1445
/gene="DICER1"
/gene_synonym="Dicer"
/note="Partner-binding domain of the endoribonuclease
Dicer; Region: Dicer_PBD; cd15903"
/db_xref="CDD:277191"
misc_feature order(1176..1181,1188..1190,1194..1199,1374..1379,
1386..1391,1398..1400,1407..1412,1419..1421)
/gene="DICER1"
/gene_synonym="Dicer"
/note="Trbp binding interface [polypeptide binding]; other
site"
/db_xref="CDD:277191"
misc_feature 1464..2042
/gene="DICER1"
/gene_synonym="Dicer"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature 1578..1649
/gene="DICER1"
/gene_synonym="Dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1587..1589
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 1593..1595
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature order(1695..1703,1911..1913,1968..1970,1974..1976)
/gene="DICER1"
/gene_synonym="Dicer"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(1923..1925,1929..1931,2004..2006,2010..2012)
/gene="DICER1"
/gene_synonym="Dicer"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2235..2501
/gene="DICER1"
/gene_synonym="Dicer"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:460900"
misc_feature 3003..3371
/gene="DICER1"
/gene_synonym="Dicer"
/note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
involved in cleaving dsRNA in the RNA interference
pathway. It generates dsRNAs which are approximately 20 bp
long (siRNAs), which in turn target hydrolysis of
homologous RNAs. PAZ domains are named...; Region:
PAZ_dicer_like; cd02843"
/db_xref="CDD:239209"
misc_feature order(3192..3194,3231..3233,3249..3251,3261..3263,
3315..3317,3339..3341,3345..3347)
/gene="DICER1"
/gene_synonym="Dicer"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239209"
misc_feature 3393..3395
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 3828..3830
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 4086..4223
/gene="DICER1"
/gene_synonym="Dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4236..>4511
/gene="DICER1"
/gene_synonym="Dicer"
/note="Ribonuclease III family; Region: RIBOc; smart00535"
/db_xref="CDD:197778"
misc_feature order(4287..4292,4299..4304,4311..4313,4320..4325,
4332..4337,4341..4349,4377..4379)
/gene="DICER1"
/gene_synonym="Dicer"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature 4728..4730
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 4752..4754
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8R418; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 4758..4760
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
misc_feature 5394..5888
/gene="DICER1"
/gene_synonym="Dicer"
/note="Ribonuclease III C terminal domain. This group
consists of eukaryotic, bacterial and archeal ribonuclease
III (RNAse III) proteins. RNAse III is a double stranded
RNA-specific endonuclease. Prokaryotic RNAse III is
important in post-transcriptional...; Region: RIBOc;
cd00593"
/db_xref="CDD:238333"
misc_feature order(5454..5459,5466..5471,5478..5480,5487..5492,
5499..5504,5508..5516,5544..5546,5808..5810,5841..5843)
/gene="DICER1"
/gene_synonym="Dicer"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature order(5454..5456,5463..5465,5475..5477,5778..5780,
5787..5789)
/gene="DICER1"
/gene_synonym="Dicer"
/note="active site"
/db_xref="CDD:238333"
misc_feature order(5463..5465,5778..5780,5787..5789)
/gene="DICER1"
/gene_synonym="Dicer"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:238333"
misc_feature 5766..5768
/gene="DICER1"
/gene_synonym="Dicer"
/note="Important for activity. /evidence=ECO:0000250;
propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); other
site"
misc_feature 5901..6089
/gene="DICER1"
/gene_synonym="Dicer"
/note="double-stranded RNA binding motif of
endoribonuclease Dicer and similar proteins; Region:
DSRM_DICER; cd10843"
/db_xref="CDD:380680"
misc_feature order(5901..5906,5910..5915,5922..5927,5934..5939,
5949..5951,5964..5972,5976..5978,5982..5984,6033..6044,
6051..6053)
/gene="DICER1"
/gene_synonym="Dicer"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:380680"
misc_feature 5952..5954
/gene="DICER1"
/gene_synonym="Dicer"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site"
exon 495..657
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 658..788
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 789..923
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 924..1084
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 1085..1253
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 1254..1726
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 1727..1859
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 1860..2102
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2103..2254
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2255..2387
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2388..2463
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2464..2603
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2604..2783
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2784..2997
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 2998..3151
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 3152..3334
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 3335..3440
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 3441..3616
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 3617..4400
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 4401..4556
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 4557..5445
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 5446..5714
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 5715..5877
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 5878..5953
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
exon 5954..6300
/gene="DICER1"
/gene_synonym="Dicer"
/inference="alignment:Splign:2.1.0"
ORIGIN
ggggacgaggcgacggcgagcgggaggacatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcgggggtccgatggttctcgaaggcccgcggcgccccgtgctgcaggttacctagggtatgaattaatacagacttggaaactgaaagaacttagaatcagcattttgagagcagaagcttgggtatgctgtgattttccaataaactgctatcacaatgtcaaaatgcagttcagacaacagcaacacagagatctcaaacattaagacgtaagctgtgctagaacaaaaatgcaatgaaagagacactggatgaatgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgcttgaagcagctctggatcataataccatagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagagctgtcttatcagatcaggggagacttcaacagaaatggcaaaaggacggtgttcttggtcaactctgcaaaccaggttgcccaacaagtgtcagctgtcagaactcactcagatctcaaggtcggggaatactcaaacctagaagtaagtgcatcttggacaaaagagaaatggaaccaagagtttactaaacatcaggttctcgttatgacttgctatgtcgccttgaatgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcaatcctagaccacccctaccgagaaattatgaagctttgtgaaaattgtccatcatgtcctcgtattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagagaagattcagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttggtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccatttactgacagaagtgggctttatgaaagactgctgatggagttagaagaagcacttaattttatcaatgactgtaacatatctgtacattcaaaagaaagagattctactttaatttctaaacagatactctcagactgccgtgcggtcctggttgtcctgggaccctggtgtgccgataaagtagctggaatgatggtcagagagctgcagaaacacatcaaacatgagcaggaggagctgcaccggaagtttctgttgttcacagacactttcctacggaaaatccacgccctgtgtgaagagcacttctcccctgcctcgcttgacctgaagtttgtcactcctaaagtaataaagctgctcgagatcttacgcaaatacaaaccgtatgagcggcagcagtttgaaagcgtggagtggtataataataggaaccaggataattacgtgtcctggagcgattctgaggatgacgaggaagatgaagagattgaagagaaagaaaagccagagacaaattttccttctccgtttaccaacattttgtgtggaattatttttgtggaaagaagatacacagccgtggtcttaaacagattgataaaggaagctggcaaacaagatccagagctggcttacatcagcagcaattttataactggacatggcatcggaaagaatcagcctcggaacaaacagatggaagcggaattcagaaaacaggaagaggtacttaggaaatttcgagcacatgaaaccaacctgcttattgcaacaagtattgtggaggagggtgttgacataccgaaatgcaacttggtggttcgtttcgatctgcccacagagtatcgatcctacgttcagtccaagggaagagcgagggcacccatctctaattatgtaatgttagcagacacagataaaataaagagttttgaagaagaccttaaaacatacaaagctattgaaaagatcttgcgaaacaaatgttccaagtcggttgataccggggaggccgacacggagcccgtggtggatgacgacgatgttttcccaccgtatgtgctgaggcctgaggacggtccccgcgtcacgatcaacacggccattgggcacgtcaacagatactgtgctagattaccaagtgatccgtttactcatctggctcctaaatgtagaacccgagagttgcctgatggtacattttattcaactctttatctgccaattaactcacctcttcgagcctccattgttggtcccccaatgagctgcattcggttggctgaaagagtcgtggctctcatttgctgtgaaaaactgcacaaaattggcgaactggatgaccatttgatgccagttgggaaggagactgttaaatatgaggaagagctggatttacacgatgaagaagagaccagtgttccaggaagaccaggttccacaaaacgaagacagtgctacccaaaagcaattccagaatgtttgagggagagctaccccaggcctggtcagccctgttacctgtacgtgatcggaatggtcctgacgacacctttacctgatgagctcaacttcagaaggcggaagctctacccccctgaggacaccacaagatgctttggaatactgacagccaagcccatacctcagatcccacactttcctgtgtacacgcgctctggagaggtgaccatatctattgagttgaagaagtccggcttcacgttatctctgcaaatgcttgagttgatcacaaggcttcaccagtatatattctcacatattcttcggcttgaaaaacctgcactagaatttaaacccacagacgcggactcagcctactgcgttctacctcttaatgttgttaatgactccagcactttggacattgactttaaattcatggaagatatcgagaaatctgaagctcgaataggcattcccagcacaaagtattcaaaagaaactccttttgttttcaaattagaagattaccaagatgcagttatcattccaagataccgcaattttgatcagcctcatcgattttatgtcgctgacgtgtacactgatcttacccccctgagtaaatttccttcccctgagtatgaaacgtttgcggagtattataaaacaaagtataaccttgacctgaccaatctcaaccagccgctgctggacgtggaccacacgtcttcacgactcaatcttttgacacctcgtcatttgaatcagaaggggaaagctctccctctgagcagtgctgagaagaggaaagccaagtgggagagcctgcagaataagcagatactggttccagaactctgtgctatacatccaattccagcatcactgtggagaaaagccgtttgtctcccgagcatactttaccgccttcactgccttctgactgcagaggagctcagagcccagacggccagcgacgctggtgtgggagtcaggtcacttcctgtggattttagataccctaacttagacttcgggtggaaaaaatctatcgacagcaaatctttcatctcaattgctaactcctcttcagctgaaaatgagaattactgtaagcacagcacaattgtcgtccctgaaaatgctgcacatcaaggtgctaatagaacctcccctctagaaaatcatgaccaaatgtctgtgaactgcagaacgttgttcagcgagtcacctggtaagctccaaattgaagtttcaacagatctgacagcaattaatggtctttcttacaataaaagtcttgccaatggcagttacgatttagctaacagagacttttgccaaggaaaccatctgaattactacaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttatacaattacgagaaccagcccaagcccagcgatgaatgtactctactgagtaataaataccttgatggaaatgctaacacatctacctcagatggaagtcccgtgacggctgccgtgcctggtactacagagactggggaggcgcccccggacaggacagcttctgagcagagcccttctcctgggtactcctcgaggacgcttggccccaaccctgggctcattcttcaggctttgaccctttcgaacgctagtgatggatttaacctggagcggctcgagatgcttggcgactccttcctcaagcatgccatcaccacgtatctcttctgcacttatcctgatgcgcatgagggccgcctttcctacatgagaagcaaaaaggtcagcaactgtaatctgtatcggcttggaaaaaagaaggggctgcccagccgcatggtggtgtccatatttgacccccctgtgaattggcttcctcctggttacgtagtaaatcaagacaaaagtaacacagagaaatgggaaaaagatgaaatgacaaaagactgcatgttggctaatggcaaactggacgatgacttcgaggaggaggaagaggaggaggaggacctgatgtggagggctcacaaggaggatgcggacgatgaggacgacttcctggaatacgatcaggagcacatcaagttcatagataacatgctgatggggtcaggggctttcgtcaagaaaatctctctttctcctttttctgccaccgattctgcatacgagtggaaaatgcccaaaaagtcctcccttggtagtctgccattctcatccgattttgaggatttcgactacagctcctgggatgcgatgtgctatctggatccgagcaaagccgttgaagaggatgactttgtggtggggttctggaatccatcagaagaaaactgtggtgtggacacagggaagcagtccatctcttacgacctgcacaccgagcagtgcattgccgacaaaagcatagccgactgtgtggaagccctgctgggctgctatttaaccagctgtggcgagagggctgctcagcttttcctctgttcgctggggctgaaggtgctcccggtaattaaaaggactgatcgggaaaaggccatgtgcccgaccagggagaatttcaccagccaacaaaagaacctttcagggagccgtgcggccgcctctggagccggctaccgagcctctgtgttgaaagacttggagtatgggtgtttgaagatccccccgaggtgtatgtttgatcaccccgacgcagaccggacactgcgtcacctgatctcgggttttgaaaatttcgaaaagaaaatcaactacagattcaagaataaggcttaccttctacaggcttttacacacgcctcctaccactacaatacgatcacggattgttaccagcgcttagaattcctgggagatgcaattttggactacctcataactaagcacctttatgaagacccacggcagcactccccaggggtcctgactgacctgcgctctgctctggtcaacaataccatcttcgcgtctttggctgtgaagtatgactaccacaagtactttaaggccgtttctcccgagctcttccatgtcatcgacgatttcgtgcagtttcagctcgagaagaacgaaatgcaaggaatggattctgagcttaggagatccgaggaggatgaagagaaggaagaggatattgaagttccaaaggccatgggggatattttcgagtcactcgcgggcgccatttacatggacagcgggatgtcgctggagacggtctggcaggtgtactatcccatgatgcggccgctgatcgaaaaattttctgcaaatgtgccccgttcccctgtgcgagaattgcttgaaatggaaccagaaactgccaaattcagcccagctgagagaacctacgatggcaaggtcagagtcaccgtggaagtggtcgggaaggggaagttcaaaggcgttggccgaagttacaggattgccaagtctgcagcagcaagaagagccctgcgaagcctcaaagctaatcaacctcaggttcccaatagctgaaaacccctttttaaattaaaaaaaaaaaaaaaaaaggaaagcagaattaaggtggaaaatatttaagttgaaaaggatgatttaaaactgatagtgagtggaacgagttgaaggcagaacgtaaagtttgtttgataacaagatagattacagaataaaacatttaacctatgtataaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]