2024-05-02 14:08:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_139225 298 bp mRNA linear ROD 11-NOV-2023 DEFINITION Mus musculus defensin beta 10 (Defb10), mRNA. ACCESSION NM_139225 VERSION NM_139225.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 298) AUTHORS Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and Harrow JL. TITLE Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome JOURNAL BMC Genomics 10, 606 (2009) PUBMED 20003482 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 298) AUTHORS Morrison GM, Semple CA, Kilanowski FM, Hill RE and Dorin JR. TITLE Signal sequence conservation and mature peptide divergence within subgroups of the murine beta-defensin gene family JOURNAL Mol Biol Evol 20 (3), 460-470 (2003) PUBMED 12644567 REFERENCE 3 (bases 1 to 298) AUTHORS Schutte BC, Mitros JP, Bartlett JA, Walters JD, Jia HP, Welsh MJ, Casavant TL and McCray PB Jr. TITLE Discovery of five conserved beta -defensin gene clusters using a computational search strategy JOURNAL Proc Natl Acad Sci U S A 99 (4), 2129-2133 (2002) PUBMED 11854508 REMARK Erratum:[Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14611] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AJ437645.1. ##Evidence-Data-START## Transcript exon combination :: AJ437645.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849376, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..298 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="8" /map="8 10.49 cM" gene 1..298 /gene="Defb10" /gene_synonym="BD-10; Defb7" /note="defensin beta 10" /db_xref="GeneID:246085" /db_xref="MGI:MGI:2179205" exon 1..88 /gene="Defb10" /gene_synonym="BD-10; Defb7" /inference="alignment:Splign:2.1.0" misc_feature 7..9 /gene="Defb10" /gene_synonym="BD-10; Defb7" /note="upstream in-frame stop codon" CDS 28..249 /gene="Defb10" /gene_synonym="BD-10; Defb7" /function="antimicrobial peptide" /note="beta-defensin 10" /codon_start=1 /product="beta-defensin 10 precursor" /protein_id="NP_631971.1" /db_xref="CCDS:CCDS40285.1" /db_xref="GeneID:246085" /db_xref="MGI:MGI:2179205" /translation="
MRTLCSLLLICCLLFSYTTPAVGDLKHLILKAQLTRCYKFGGFCHYNICPGNSRFMSNCHPENLRCCKNIKQF"
sig_peptide 28..96 /gene="Defb10" /gene_synonym="BD-10; Defb7" /inference="COORDINATES: ab initio prediction:SignalP:4.0" mat_peptide 97..246 /gene="Defb10" /gene_synonym="BD-10; Defb7" /product="Beta-defensin 10. /id=PRO_0000006938" /note="propagated from UniProtKB/Swiss-Prot (Q8R2I8.1)" misc_feature 124..231 /gene="Defb10" /gene_synonym="BD-10; Defb7" /note="Beta defensin; Region: Defensin_beta; pfam00711" /db_xref="CDD:425833" exon 89..298 /gene="Defb10" /gene_synonym="BD-10; Defb7" /inference="alignment:Splign:2.1.0" ORIGIN
ggagtctgagtgccctttctaccagccatgaggactctctgctctctgctgctgatatgctgcctccttttctcatataccaccccagctgttggagatctaaaacatcttatactcaaagcacaacttacacggtgctacaagttcggagggttctgtcactataatatttgtcctggtaatagcaggtttatgagtaactgtcacccagagaatctccgctgttgcaagaacataaaacaattttaaggaagcacatggaagtcaagtgacagatgtgtaactgatttttaataaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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