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2021-10-29 03:08:54, GGRNA.v2 : RefSeq release 207 (Jul, 2021)

LOCUS       NM_133621               1070 bp    mRNA    linear   ROD 21-APR-2021
DEFINITION  Rattus norvegicus HOP homeobox (Hopx), mRNA.
ACCESSION   NM_133621
VERSION     NM_133621.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Trivedi CM, Zhu W, Wang Q, Jia C, Kee HJ, Li L, Hannenhalli S and
            Epstein JA.
  TITLE     Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic
            cardiac myocyte proliferation
  JOURNAL   Dev Cell 19 (3), 450-459 (2010)
   PUBMED   20833366
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Asanoma K, Kato H, Yamaguchi S, Shin CH, Liu ZP, Kato K, Inoue T,
            Miyanari Y, Yoshikawa K, Sonoda K, Fukushima K and Wake N.
  TITLE     HOP/NECC1, a novel regulator of mouse trophoblast differentiation
  JOURNAL   J Biol Chem 282 (33), 24065-24074 (2007)
   PUBMED   17576768
REFERENCE   3  (bases 1 to 1070)
  AUTHORS   Cheng A, Shin-ya K, Wan R, Tang SC, Miura T, Tang H, Khatri R,
            Gleichman M, Ouyang X, Liu D, Park HR, Chiang JY and Mattson MP.
  TITLE     Telomere protection mechanisms change during neurogenesis and
            neuronal maturation: newly generated neurons are hypersensitive to
            telomere and DNA damage
  JOURNAL   J Neurosci 27 (14), 3722-3733 (2007)
   PUBMED   17409236
REFERENCE   4  (bases 1 to 1070)
  AUTHORS   Kee HJ, Kim JR, Nam KI, Park HY, Shin S, Kim JC, Shimono Y,
            Takahashi M, Jeong MH, Kim N, Kim KK and Kook H.
  TITLE     Enhancer of polycomb1, a novel homeodomain only protein-binding
            partner, induces skeletal muscle differentiation
  JOURNAL   J Biol Chem 282 (10), 7700-7709 (2007)
   PUBMED   17192267
REFERENCE   5  (bases 1 to 1070)
  AUTHORS   Yin Z, Gonzales L, Kolla V, Rath N, Zhang Y, Lu MM, Kimura S,
            Ballard PL, Beers MF, Epstein JA and Morrisey EE.
  TITLE     Hop functions downstream of Nkx2.1 and GATA6 to mediate
            HDAC-dependent negative regulation of pulmonary gene expression
  JOURNAL   Am J Physiol Lung Cell Mol Physiol 291 (2), L191-L199 (2006)
   PUBMED   16510470
REFERENCE   6  (bases 1 to 1070)
  AUTHORS   Kook H, Lepore JJ, Gitler AD, Lu MM, Wing-Man Yung W, Mackay J,
            Zhou R, Ferrari V, Gruber P and Epstein JA.
  TITLE     Cardiac hypertrophy and histone deacetylase-dependent
            transcriptional repression mediated by the atypical homeodomain
            protein Hop
  JOURNAL   J Clin Invest 112 (6), 863-871 (2003)
   PUBMED   12975471
REFERENCE   7  (bases 1 to 1070)
  AUTHORS   Adu J, Leong FT, Smith NR, Leek JP, Markham AF, Robinson PA and
            Mighell AJ.
  TITLE     Expression of mOb1, a novel atypical 73 amino acid K50-homeodomain
            protein, during mouse development
  JOURNAL   Gene Expr Patterns 2 (1-2), 39-43 (2002)
   PUBMED   12617835
REFERENCE   8  (bases 1 to 1070)
  AUTHORS   Shin CH, Liu ZP, Passier R, Zhang CL, Wang DZ, Harris TM, Yamagishi
            H, Richardson JA, Childs G and Olson EN.
  TITLE     Modulation of cardiac growth and development by HOP, an unusual
            homeodomain protein
  JOURNAL   Cell 110 (6), 725-735 (2002)
   PUBMED   12297046
REFERENCE   9  (bases 1 to 1070)
  AUTHORS   Chen F, Kook H, Milewski R, Gitler AD, Lu MM, Li J, Nazarian R,
            Schnepp R, Jen K, Biben C, Runke G, Mackay JP, Novotny J, Schwartz
            RJ, Harvey RP, Mullins MC and Epstein JA.
  TITLE     Hop is an unusual homeobox gene that modulates cardiac development
  JOURNAL   Cell 110 (6), 713-723 (2002)
   PUBMED   12297045
REFERENCE   10 (bases 1 to 1070)
  AUTHORS   Weaver AJ, Sullivan WP, Felts SJ, Owen BA and Toft DO.
  TITLE     Crystal structure and activity of human p23, a heat shock protein
            90 co-chaperone
  JOURNAL   J Biol Chem 275 (30), 23045-23052 (2000)
   PUBMED   10811660
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000252.1.
            On Nov 25, 2020 this sequence version replaced NM_133621.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ221225.1, FQ229504.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JACYVU010000252.1  11063157-11063274
            119-275             JACYVU010000252.1  11063400-11063556
            276-1070            JACYVU010000252.1  11070139-11070933
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..1070
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /note="HOP homeobox"
                     /db_xref="GeneID:171160"
                     /db_xref="RGD:621841"
     exon            1..118
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    57..59
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /note="upstream in-frame stop codon"
     exon            119..275
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..353
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /note="odd homeobox 1; odd homeobox protein 1; global
                     ischemia-induced protein 15B; global ischemia-induced gene
                     15B protein; global ischemia induced protein GIIG15B;
                     homeobox only domain"
                     /codon_start=1
                     /product="homeodomain-only protein"
                     /protein_id="NP_598305.2"
                     /db_xref="GeneID:171160"
                     /db_xref="RGD:621841"
                     /translation="
MSAQTASGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECRSVTD"
     misc_feature    159..317
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     exon            276..1070
                     /gene="Hopx"
                     /gene_synonym="GIIg15b; Hod; Obl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agccctgcgtgtgtcctcagtccttagggcagctccggacctccggaggcagctcttgaggagcttcctccactgtcccctcagagaggcaggcgagaggctctccatccttagccagacgctcacggaccatgtcggcgcagactgcgagcggccccacggaggaccaggtggagatcctggagtacaacttcaacaaggtcaacaagcaccccgaccccaccacgctgtgcctcatcgcagccgaggcgggcctcacggaggagcagacgcagaaatggtttaagcagcgcctggcggagtggcggcggtcagaaggcctgccttcggaatgcagatcggtcacggactagggagccaggcccttgagcttgctcccggaacttccgtgcctcagtttacccaggctgttttgatgtttcagtgcagtgttgaatgtctcattgtttgctgtcctgctgtttaacacaatgtgttttttgaatgtatataactaaagaaacaaaataacaggaagctaaatgcagttctgtgtaaagcgatggcttggccgggagaggggtgtggcttacgtttctctttggattttaatgaaagatgatgtgggagcagtttttgtttgcccttgaccgccactttccaatccgtatgtaccaccatccgtttcagagcattccagagctgcctggcttctgttgagaagttaaaggaacgggcaggcaggggagacacctcagtccaccttcctgtgcctctttcctccgcttcacttaacactctggtggttggatgagaacacgggtgtatttgagtcattcaatttttatatatttgaaatatagatatataaaacagttccttctcttacagctgcgttaccttggaaaacaccctcgtttagcagcgacagattccaaggggcagaaaagcaggtagctagggaaaaaaagttacagagtctagaatctaccttatttaaatgaacttgttacatttattttgctgaataacatgaaccgcttttttttgtctcaaaaattatattctaaataaaaaactttgagaatcca
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]