2021-01-20 07:16:43, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS NM_131637 1950 bp mRNA linear VRT 09-OCT-2020 DEFINITION Danio rerio claudin 7b (cldn7b), mRNA. ACCESSION NM_131637 VERSION NM_131637.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1950) AUTHORS Jin M, Wang D, Xu W, Wang H and Cao Y. TITLE Claudin-7b and Claudin-h are required for controlling cilia morphogenesis in the zebrafish kidney JOURNAL Mech Dev 161, 103595 (2020) PUBMED 31887432 REFERENCE 2 (bases 1 to 1950) AUTHORS Zhang Z, Ran C, Ding QW, Liu HL, Xie MX, Yang YL, Xie YD, Gao CC, Zhang HL and Zhou ZG. TITLE Ability of prebiotic polysaccharides to activate a HIF1alpha-antimicrobial peptide axis determines liver injury risk in zebrafish JOURNAL Commun Biol 2, 274 (2019) PUBMED 31372513 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1950) AUTHORS Lin X, Zhou Q, Zhao C, Lin G, Xu J and Wen Z. TITLE An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis JOURNAL Dev Cell 49 (4), 605-617 (2019) PUBMED 31006648 REFERENCE 4 (bases 1 to 1950) AUTHORS Beaudoin JD, Novoa EM, Vejnar CE, Yartseva V, Takacs CM, Kellis M and Giraldez AJ. TITLE Analyses of mRNA structure dynamics identify embryonic gene regulatory programs JOURNAL Nat Struct Mol Biol 25 (8), 677-686 (2018) PUBMED 30061596 REFERENCE 5 (bases 1 to 1950) AUTHORS Li X, Song G, Zhao Y, Zhao F, Liu C, Liu D, Li Q and Cui Z. TITLE Claudin7b is required for the formation and function of inner ear in zebrafish JOURNAL J Cell Physiol 233 (4), 3195-3206 (2018) PUBMED 28834538 REMARK GeneRIF: Cldn7b is essential for the formation and proper function of inner ear REFERENCE 6 (bases 1 to 1950) AUTHORS Gallardo VE, Liang J, Behra M, Elkahloun A, Villablanca EJ, Russo V, Allende ML and Burgess SM. TITLE Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish JOURNAL BMC Dev Biol 10, 120 (2010) PUBMED 21144052 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 1950) AUTHORS Clelland ES and Kelly SP. TITLE Tight junction proteins in zebrafish ovarian follicles: stage specific mRNA abundance and response to 17beta-estradiol, human chorionic gonadotropin, and maturation inducing hormone JOURNAL Gen Comp Endocrinol 168 (3), 388-400 (2010) PUBMED 20553723 REFERENCE 8 (bases 1 to 1950) AUTHORS Davey C, Tallafuss A and Washbourne P. TITLE Differential expression of neuroligin genes in the nervous system of zebrafish JOURNAL Dev Dyn 239 (2), 703-714 (2010) PUBMED 20063411 REFERENCE 9 (bases 1 to 1950) AUTHORS Reischauer S, Levesque MP, Nusslein-Volhard C and Sonawane M. TITLE Lgl2 executes its function as a tumor suppressor by regulating ErbB signaling in the zebrafish epidermis JOURNAL PLoS Genet 5 (11), e1000720 (2009) PUBMED 19911055 REFERENCE 10 (bases 1 to 1950) AUTHORS Loh YH, Christoffels A, Brenner S, Hunziker W and Venkatesh B. TITLE Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes JOURNAL Genome Res 14 (7), 1248-1257 (2004) PUBMED 15197168 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ011788.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AJ011788.1, BC066408.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168448, SAMEA4476729 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1950 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="10" /map="10" gene 1..1950 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="claudin 7b" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" misc_feature 138..140 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="upstream in-frame stop codon" CDS 156..803 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="claudin-7; claudin-like protein ZF4A22" /codon_start=1 /product="claudin-7-B" /protein_id="NP_571712.1" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" /translation="
MAHKGLQLLGFTLSLLGLIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVAILLTVAGLGVASMGMKCTNCGGDDKVKKSRIAMTGGIILSVGALCSIVACGWFTSQIIRDFYNPFTPVNTKYEFGAAIFIAWAGAFLDIMGGGMLASSCSKGQSSPNYPKSSRPVKSSRPPSSSKEYV"
misc_feature 165..701 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:250157" misc_feature 177..239 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 399..461 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 507..569 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 642..704 /gene="cldn7b" /gene_synonym="cb388; claudin7; cld; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" ORIGIN
ccacgcgtccggcttctccgatttttatttacattttaaacttattttattattttgaccaattcataatcggaaggctgctgaaagcgagcgatatttggacactaataagttatttgctaagcaggtttagtttttaaactcattctgagaagatggcacataaaggactgcaactcctagggtttactctatcgttgctagggttgattgggctcattattggcacaatcatgccccagtggaagatgtctgcttacgttggagataatataatcacagctattgcgatgtaccagggcctttggatgtcgtgcgcttaccagagcaccggccaacagcaatgcaaggtgtatgactccgtcctacaactcgacagtgctctccaggcaactcgtgcccttatggttgtagcaattcttcttacagtagctggactgggtgtggccagcatgggcatgaagtgtactaactgtggtggtgatgacaaggtcaaaaagtcccgcattgccatgacaggcggtataatcctctctgttggagccctctgtagcattgttgcctgtggctggtttacaagtcaaattatcagggatttctacaaccccttcacacctgtcaatacaaagtatgaatttggtgcagctattttcatcgcctgggctggtgcatttctcgatataatgggtggaggcatgttggcctcttcttgctcaaagggtcagtcatctcctaattaccctaagtcctccagacccgtcaagtcctccagaccacccagcagcagcaaggaatatgtttgagccatttgttcacgagctggaaaggacatgatcaatcccagagcatgggtagaagtttgccctgtcagctgatatgagatctgtttaatttggtttgtatgtttgactatagatagaaaaaacagctcagaaaggtatttttggccaacttttacttgtgttctgatacagcagcccaccaaaaatggtcacttctttcttttggttagctccttgttccaccttccccaccccgattataaaatgtgagtttgcaaaggggcttcttccccagagtcttcctcatttcagattactgtcacctttagtgaacatgaaagagggagacctgctcagggaaaaatcattactcatactgctctgttacaccaaatctctgcttccagctgttaaacccttgcttgcatcattttaggaactgcgccagacactgaggtgcttatgaacaattaatacatgcattacatttttaaagctaagagtaacatgcaaataacctggttcactttgcagtcttttccctgtctggtccccatgccagcagaaactcttttcatacttcattttatacaaattagcaccctttaggtgaagtttcactcgtaagttcaatgaatcattcttttcagtgtatgctgatgaagctggattaaaacttttgatggaaaaatgaagattaatttggtttggatgaggcttaacatgaagcactaaaatcaaattgctctttcttatgcaacatgaaccttttgatttgctgttgtcctttgttttgagtgtacaccttggtttttgtgcccatttaggaaggtaacatgttttttgtttttatacactccattaattggtcacaaaaaagctgtgaatattggcttagttgaatcactgctggttccaactatttttatgttactgtaaaactttttttttttatccataatatgaacatttaaaactggactatacttttttttttttttgctttggtctgtgcttgaaccatttgatgtgggttgcactcaagtctacttaggatagagtcacgtgaatgtctgtgactagcttatgcaaatatttaactttttaaaatgtttttgacttcaagtttgcaattgaaaaattttatgtaaataaattttttaaacag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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