LOCUS       NM_125939               1553 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein 25 (HB25), mRNA.
ACCESSION   NM_125939
VERSION     NM_125939.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1553)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1553)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1553)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_125939.2.
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1553
                     /gene="HB25"
                     /locus_tag="AT5G65410"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25;
                     ATHB25; homeobox protein 25; MNA5.14; MNA5_14; ZFHD2;
                     ZHD1; ZINC FINGER HOMEODOMAIN 1; ZINC FINGER HOMEODOMAIN
                     2"
                     /note="Encodes ZFHD2, a member of the zinc finger
                     homeodomain transcriptional factor family."
                     /db_xref="Araport:AT5G65410"
                     /db_xref="GeneID:836666"
                     /db_xref="TAIR:AT5G65410"
     CDS             178..1017
                     /gene="HB25"
                     /locus_tag="AT5G65410"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25;
                     ATHB25; homeobox protein 25; MNA5.14; MNA5_14; ZFHD2;
                     ZHD1; ZINC FINGER HOMEODOMAIN 1; ZINC FINGER HOMEODOMAIN
                     2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP847638.1,INSD:EL185287.1,INSD:EH799327.1,
                     INSD:BP844711.1,INSD:AV827739.1,INSD:DR355532.1,
                     INSD:DR233200.1,INSD:BP841719.1,INSD:BE523078.1,
                     INSD:EG514338.1,INSD:EL150080.1,INSD:AV799156.1,
                     INSD:EG439034.1,INSD:CF773560.1,INSD:EG514302.1,
                     INSD:DR233202.1,INSD:T46302.1,INSD:EG439033.1,
                     INSD:DR233201.1,INSD:EH920411.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT006304.1,INSD:BT002385.1"
                     /note="homeobox protein 25 (HB25); FUNCTIONS IN: DNA
                     binding, sequence-specific DNA binding transcription
                     factor activity, zinc ion binding; INVOLVED IN: regulation
                     of transcription; LOCATED IN: intracellular; EXPRESSED IN:
                     14 plant structures; EXPRESSED DURING: 9 growth stages;
                     CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class
                     (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich
                     dimerisation domain (InterPro:IPR006456), Zinc finger,
                     C2H2-type (InterPro:IPR007087), Homeodomain-related
                     (InterPro:IPR012287); BEST Arabidopsis thaliana protein
                     match is: homeobox protein 22 (TAIR:AT4G24660.1); Has 1807
                     Blast hits to 1807 proteins in 277 species: Archae - 0;
                     Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
                     Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein 25"
                     /protein_id="NP_201344.1"
                     /db_xref="GeneID:836666"
                     /db_xref="TAIR:AT5G65410"
                     /db_xref="Araport:AT5G65410"
                     /translation="

MEFEDNNNNNDEEQEEDMNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPPPPQSSFHHEQDQP"

     misc_feature    391..555
                     /gene="HB25"
                     /locus_tag="AT5G65410"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25;
                     ATHB25; homeobox protein 25; MNA5.14; MNA5_14; ZFHD2;
                     ZHD1; ZINC FINGER HOMEODOMAIN 1; ZINC FINGER HOMEODOMAIN
                     2"
                     /note="ZF-HD protein dimerization region; Region:
                     ZF-HD_dimer; pfam04770"
                     /db_xref="CDD:398439"
     misc_feature    748..918
                     /gene="HB25"
                     /locus_tag="AT5G65410"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25;
                     ATHB25; homeobox protein 25; MNA5.14; MNA5_14; ZFHD2;
                     ZHD1; ZINC FINGER HOMEODOMAIN 1; ZINC FINGER HOMEODOMAIN
                     2"
                     /note="homeobox domain, ZF-HD class; Region: homeo_ZF_HD;
                     TIGR01565"
                     /db_xref="CDD:130628"
ORIGIN      

aataaaagataaaaataaaataaaaacacttctcaaatcggcaaatccaaaagagagagataaaagagagaaagataatctctttaatgtccacattatctctctcttcttcttcaccttcttgagaaacctcctctccccaaaaacgacgtagtttcacatttctcgacttcttgaatggagtttgaagacaacaacaacaacaacgacgaagagcaagaagaggatatgaatcttcatgaggaagaagaagacgacgacgccgtttacgactctcctcctctctctcgtgttctccccaaagcctcgacagaaagtcatgaaaccaccggaactacttccacaggcggtggcggaggattcatggttgttcacggcggtggagggagcaggtttaggttccgtgagtgtctcaagaaccaagcggtgaacataggaggacacgcggtcgatggttgtggtgagtttatgccagctggaatcgaaggtaccatcgacgctctaaaatgcgccgcttgtggctgtcaccgtaacttccaccgcaaggaattaccttacttccatcacgcgccgccacaacatcagcctcctcctcccccgccagggttttaccgtcttccagctccggttagctaccgaccaccaccgtcacaagctcctcctcttcagctcgctcttccccctccacaaagagagagatcagaagatccaatggagacgtcttcagctgaagcaggaggagggattaggaagaggcataggactaagtttacggctgagcaaaaggaaaggatgttagctttagctgagaggattggatggagaattcagagacaagacgatgaagtgattcagagattttgtcaggagactggtgttccgagacaagttcttaaggtttggttacataacaacaaacacactcttggtaagtcgccttcaccacttcatcatcatcaggctcctcctcctccaccaccacagtcttcgtttcatcatgaacaagaccaaccatgaatcttgaatttctttgatcactagggttttaatttagcttaattaattacttgagaaatttgagagacaaggtttttattgtttaatttatgtacccattttcctctttgatgatgatgttgatgatgttggtgatgatctttaatttctggttaattatgttttgcattagtagctttttaagtctcttagcaaaatctttgattggtctgactataaattactgacgtccttatttgcatcacatttgtcagtgtttgaatttatcatgttttgtgtatgaatctatatgaacttgatcctgaatatatatgtacatgtattttgtgtatgcattatttatgtcttctttagcatatgatttcatttttattttattttgtgcagcctaagcttttacttgttgacattgttatatattgtttcttaagttcctggtgtttttgtgtgttattatatttgactgaccattattttcacccacacacacatttgtagctagctagatctgatagtgttcttgtttcttaagttct

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