LOCUS       NM_122431               2046 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein knotted-1-like 3 (KNAT3),
            mRNA.
ACCESSION   NM_122431
VERSION     NM_122431.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 2046)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2046)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2046)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_122431.2.
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..2046
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="A member of class II knotted1-like homeobox gene
                     family (together with KNAT4 and KNAT5). Expressed in:
                     hypocotyl-root boundary, anther-filament junction in
                     flowers, ovule-funiculus and peduncle-silique boundaries,
                     petioles and root. Light-regulated expression with
                     differential response to red/far-red light. KNAT3 promoter
                     activity showed cell-type specific pattern along
                     longitudinal root axis, restricted mainly to the
                     differentiation zone of the root, namely in the cortex and
                     pericycle. Not detected in lateral root primordia"
                     /db_xref="Araport:AT5G25220"
                     /db_xref="GeneID:832593"
                     /db_xref="TAIR:AT5G25220"
     CDS             265..1560
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES008503.1,INSD:DR214586.1,INSD:EH812040.1,
                     INSD:EL127347.1,INSD:ES094752.1,INSD:EG439868.1,
                     INSD:EL332748.1,INSD:EL983026.1,INSD:EL014800.1,
                     INSD:EH854489.1,INSD:DR228179.1,INSD:T44387.1,
                     INSD:EL087734.1,INSD:ES012433.1,INSD:DR214588.1,
                     INSD:EL133557.1,INSD:DR363253.1,INSD:EL328697.1,
                     INSD:ES013959.1,INSD:DR749746.1,INSD:ES132543.1,
                     INSD:BP784785.1,INSD:DR363251.1,INSD:EL337709.1,
                     INSD:CK120346.1,INSD:BP646399.1,INSD:EL257308.1,
                     INSD:EH849111.1,INSD:EL210705.1,INSD:DR214589.1,
                     INSD:AV805294.1,INSD:CD531700.1,INSD:EL228103.1,
                     INSD:EH873030.1,INSD:DR214591.1,INSD:AV562945.1,
                     INSD:EL099376.1,INSD:EH909082.1,INSD:BP816813.1,
                     INSD:BP812322.1,INSD:ES164923.1,INSD:AV561133.1,
                     INSD:ES175492.1,INSD:EL111730.1,INSD:DR214587.1,
                     INSD:EL999533.1,INSD:EH801192.1,INSD:EL009390.1,
                     INSD:BP585149.1,INSD:EL305054.1,INSD:ES196517.1,
                     INSD:EL065945.1,INSD:T44158.1,INSD:AV826640.1,
                     INSD:EL156555.1,INSD:EL068233.1,INSD:DR749745.1,
                     INSD:EL320231.1,INSD:EH863976.1,INSD:EL306462.1,
                     INSD:EL222154.1,INSD:DR214590.1,INSD:ES101832.1,
                     INSD:EL978859.1,INSD:AV795936.1,INSD:DR214592.1,
                     INSD:DR214593.1,INSD:DR214583.1,INSD:DR363254.1,
                     INSD:DR214584.1,INSD:DR214585.1,INSD:EL114645.1,
                     INSD:EH918535.1,INSD:DR373339.1,INSD:EL147995.1,
                     INSD:ES005467.1,INSD:BP592056.1,INSD:EH884004.1,
                     INSD:CD534945.1,INSD:ES060412.1,INSD:EL252775.1,
                     INSD:ES098065.1,INSD:EL114300.1,INSD:EL119257.1,
                     INSD:EH819504.1,INSD:EL990489.1,INSD:ES183610.1,
                     INSD:EH914053.1,INSD:BP777586.1,INSD:EL981596.1,
                     INSD:EH849479.1,INSD:EH946570.1,INSD:EL258356.1,
                     INSD:EL189125.1,INSD:EL133670.1,INSD:EH963690.1,
                     INSD:EG439867.1,INSD:EL113462.1,INSD:EH965846.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY120762.1,INSD:BX833728.1,INSD:X92392.1,
                     INSD:AY086091.1,INSD:BX831253.1,INSD:BX841646.1,
                     INSD:BT000139.1"
                     /note="KNOTTED1-like homeobox gene 3 (KNAT3); FUNCTIONS
                     IN: transcription activator activity, sequence-specific
                     DNA binding transcription factor activity; INVOLVED IN:
                     response to light stimulus, detection of cytokinin
                     stimulus, cellular response to cytokine stimulus; LOCATED
                     IN: cytosol, nucleus; EXPRESSED IN: 35 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: ELK (InterPro:IPR005539), Homeobox
                     (InterPro:IPR001356), KNOX1 (InterPro:IPR005540),
                     Homeodomain-like (InterPro:IPR009057), KNOX2
                     (InterPro:IPR005541), Homeodomain-related
                     (InterPro:IPR012287); BEST Arabidopsis thaliana protein
                     match is: KNOTTED1-like homeobox gene 4
                     (TAIR:AT5G11060.1); Has 1807 Blast hits to 1807 proteins
                     in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
                     Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
                     339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 3"
                     /protein_id="NP_197904.1"
                     /db_xref="GeneID:832593"
                     /db_xref="TAIR:AT5G25220"
                     /db_xref="Araport:AT5G25220"
                     /translation="

MAFHHNHLSQDLSFNHFTDQHQPPPPQPPPPPPQQQQHFQEAPPPNWLNTALLRSSDNNNNFLNLHTATANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNNASIVGDGIDDVTGGADTMIQGEMKTGGGENKNDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRKSNAGDNSGRERFA"

     misc_feature    742..855
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    913..1065
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    1228..1293
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    order(1297..1311,1315..1317,1375..1377,1393..1395,
                     1432..1434,1438..1443,1450..1455,1459..1467,1471..1476)
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1303..1305,1312..1314,1441..1443,1450..1455,
                     1462..1464)
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1351..1467
                     /gene="KNAT3"
                     /locus_tag="AT5G25220"
                     /gene_synonym="F21J6.18; F21J6_18; KNAT3 HOMEOBOX PROTEIN;
                     KNOTTED1-like homeobox gene 3"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

tctcgatctctcagctctgtgcaactctgaacacacccacacatatatactcagatacatacatacacaccacaaaaaccaattattttccaattttaagaaaagtttctgtgtctttttttttttttttggtgataattgaaacatatgaaacaatcgtcgtcatagaagcagcagagattcaccttctttctttatctttccctctcagaaacaggaaacaaaattcaaaaagaacaaaaaaaaaaaggtcaaaccaaaacgatggcgtttcatcacaatcatctctcacaagacctctccttcaatcatttcaccgaccaacaccaacctccacctccgcaaccgcctcctcctcctccgcaacagcaacaacatttccaagaagcaccgcctcctaattggttaaacacagcgcttcttcgttcctcagataacaacaataacttcctcaacctccacacagccaccgctaacaccacaaccgcaagcagctccgattctccttcctccgccgccgccgccgccgctgctaaccagtggctatctcgctcctcctctttcctccaacgaaacaacaacaacaacgcttccatagtcggagatgggatcgatgatgtcaccggaggagcagacactatgattcagggagagatgaaaaccggcggtggagaaaacaaaaacgacggcggaggagctacggcggcggatggagtagtgagctggcagaatgcgagacacaaggcggagatcctttcgcatcctctttacgagcagcttttgtcggcgcacgttgcttgtttgagaatcgcgactccggttgatcagcttccgagaatcgatgctcagcttgctcagtctcaacacgtcgtcgctaaatactcagctttaggcgccgccgctcaaggtctcgtcggcgacgataaagaacttgaccagttcatgacacattatgtgttgctactgtgttcatttaaagagcaattgcaacaacatgtgcgtgttcatgcaatggaagctgtgatggcttgttgggagattgagcagtctcttcaaagcttaacaggagtgtctcctggagaagggatgggagcaacaatgtctgacgatgaagatgaacaagtagagagtgatgctaatatgttcgatgggggattagatgtgttgggttttggtcctttgattcctactgagagtgagaggtcgttgatggaaagagttagacaagaacttaaacatgaactcaaacagggttacaaggagaagatagtagacataagagaggagatattaaggaagagaagagctgggaagttaccaggagataccacctctgttctcaaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgaggttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaatcagagaaagaggaactggcatagcaatccatcttcttccactgtattgaagaacaaacgcaaaagcaatgcaggtgacaatagcggaagagagcggttcgcgtagaaacaacaaacatatgatgtgaattggggaggtggaagatgggatttgaaagcagggttttagggatttaaagttgagaattttatggaggagtttggattatacagagagaggggacagtattagaaagtaactttttgtgcaattacatagtaacgtagtttggttatgtgattatgcccatatattttattaagtagcacacaaaccaaaaagaaaatatgaaaactgaagatgcaggcttttgtttaatgttttttgtttgtttgtctgcatgagttttttttttatgaaccatcagataatcatcatcatcatccataatatatcttgtgaataaagatagtgagagaggagaacattgggatgcacaagttttcttaatctactagtatatgttacgcattgaccaggtgcatatgttaatttgtatcgcaccacttggttagcttaatctatgtgactattatacagtatatgtttcgc

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