LOCUS       NM_117780               1333 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein 2 (HB-2), mRNA.
ACCESSION   NM_117780
VERSION     NM_117780.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1333)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1333)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_117780.3.
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1333
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="Encodes a homeodomain-leucine zipper protein that
                     is rapidly and strongly induced by changes in the ratio of
                     red to far-red light. It is also involved in cell
                     expansion and cell proliferation and in the response to
                     auxin."
                     /db_xref="Araport:AT4G16780"
                     /db_xref="GeneID:827384"
                     /db_xref="TAIR:AT4G16780"
     CDS             178..1032
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /inference="Similar to RNA sequence,
                     EST:INSD:T20542.1,INSD:DR205684.1,INSD:EH811469.1,
                     INSD:AV782898.1,INSD:EG478582.1,INSD:EL111582.1,
                     INSD:EH969243.1,INSD:EG473918.1,INSD:EL146856.1,
                     INSD:N65151.1,INSD:EL207584.1,INSD:EG473921.1,
                     INSD:DR205682.1,INSD:EG478583.1,INSD:DR751552.1,
                     INSD:DR205683.1,INSD:AV822207.1,INSD:T43493.1,
                     INSD:T04466.1,INSD:BP848180.1,INSD:BP664736.1,
                     INSD:EL174073.1,INSD:T76261.1,INSD:H36654.1,
                     INSD:EL149960.1,INSD:DR377687.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:M90394.1,INSD:AF375453.1,INSD:X68145.1,
                     INSD:AY081747.1"
                     /note="homeobox protein 2 (HB-2); CONTAINS InterPro
                     DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712),
                     Helix-turn-helix motif, lambda-like repressor
                     (InterPro:IPR000047), Homeobox (InterPro:IPR001356),
                     Homeobox, conserved site (InterPro:IPR017970),
                     Homeodomain-like (InterPro:IPR009057), Leucine zipper,
                     homeobox-associated (InterPro:IPR003106),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: Homeobox-leucine zipper protein
                     4 (HB-4) / HD-ZIP protein (TAIR:AT5G47370.1); Has 7230
                     Blast hits to 7123 proteins in 465 species: Archae - 0;
                     Bacteria - 0; Metazoa - 4716; Fungi - 327; Plants - 2046;
                     Viruses - 18; Other Eukaryotes - 123 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="homeobox protein 2"
                     /protein_id="NP_193411.1"
                     /db_xref="GeneID:827384"
                     /db_xref="TAIR:AT4G16780"
                     /db_xref="Araport:AT4G16780"
                     /translation="

MMFEKDDLGLSLGLNFPKKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPNSDSSQKETRTFIRGIDVNRPPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREEDTDPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPPTTLTMCPSCEHVSVPPPQPQAATSAHHRSLPVNAWAPATRISHGLTFDALRPRS"

     misc_feature    199..498
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="HD-ZIP protein N terminus; Region: HD-ZIP_N;
                     pfam04618"
                     /db_xref="CDD:461370"
     misc_feature    order(559..570,574..576,625..627,643..645,682..684,
                     688..693,700..705,709..717,721..726)
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    559..723
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(562..564,571..573,691..693,700..705,712..714)
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    727..858
                     /gene="HB-2"
                     /locus_tag="AT4G16780"
                     /gene_synonym="ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2;
                     ATHB-2; ATHB2; DL4415W; FCAALL.101; HAT4; homeobox protein
                     2"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
ORIGIN      

tgcccccagctagtcacatactcatgattgcaaaatctctctctctctctgcctctctatatattaacctttcttcttcctttactttctcatcttctatctctcaaaagaaaagcagacaactttatttgcaaaaacagagtttttttttcttatcttgagaaagttcaacagaagatgatgttcgagaaagacgatctgggtctaagcttaggcttgaattttccaaagaaacagatcaatctcaaatcaaatccatctgtttctgttactccttcttcttcttcttttggattattcagaagatcttcatggaacgagagttttacttcttcagttccaaactcagattcgtcacaaaaagaaacaagaactttcatccgaggaatcgacgtgaacagaccaccgtctacagcggaatacggcgacgaagacgctggagtatcttcacctaacagtacagtctcaagctctacagggaaaagaagcgagagagaagaagacacagatccacaaggctcaagaggaatcagtgacgatgaagatggtgataactccaggaaaaagcttagactttccaaagatcaatctgctattcttgaagagaccttcaaagatcacagtactctcaatccgaagcagaagcaagcattggctaaacaattagggttacgagcaagacaagtggaagtttggtttcagaacagacgagcaagaacaaagctgaagcaaacggaggtagactgcgagttcttacggagatgctgcgagaatctaacggaagagaaccgtcggctacaaaaagaagtaacggaattgagagcacttaagctctctcctcagttctacatgcacatgagcccacccactactttgaccatgtgcccttcatgtgaacacgtgtcggtcccgccaccacaacctcaggctgctacgtcagcgcaccaccggtcgttgccggtcaatgcgtgggctcctgcgacgaggatatctcacggcttgacttttgacgctcttcgtcctaggtcctaagtctttttacttgcaaccaaagggcattttggtcgttttttaagtttcatggaccagatatgcatgtagttgttaacatgtatgtattttcttagaaagaaagaaaaacagattaatatttttctagcttaaaccaacatatatgtgtcatgctaacaagtaacaacaaatatttagagccaatgctatcagatattatgactttgaaatcattttgttttgttttgttgcaataaatattttggacaaaactatcacaagaaactttattgcaataatatttatagtgtctagcgagtag

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