LOCUS       NM_116210               2000 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family
            protein (AT3G63450), mRNA.
ACCESSION   NM_116210
VERSION     NM_116210.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2000)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2000)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2000)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_116210.3.
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2000
                     /locus_tag="AT3G63450"
                     /db_xref="Araport:AT3G63450"
                     /db_xref="GeneID:825520"
                     /db_xref="TAIR:AT3G63450"
     CDS             450..1664
                     /locus_tag="AT3G63450"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR363809.1,INSD:ES142071.1,INSD:ES175051.1,
                     INSD:EH921901.1,INSD:EL987951.1,INSD:ES194110.1,
                     INSD:ES008487.1,INSD:EL975621.1,INSD:EL156497.1,
                     INSD:BP793639.1,INSD:ES086524.1,INSD:ES187527.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BT012552.1"
                     /note="RNA-binding (RRM/RBD/RNP motifs) family protein;
                     FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
                     acid binding; INVOLVED IN: biological_process unknown;
                     LOCATED IN: cellular_component unknown; CONTAINS InterPro
                     DOMAIN/s: RNA recognition motif, RNP-1
                     (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
                     (InterPro:IPR012677); BEST Arabidopsis thaliana protein
                     match is: Zinc finger (CCCH-type) family protein / RNA
                     recognition motif (RRM)-containing protein
                     (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in
                     33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi
                     - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="RNA-binding (RRM/RBD/RNP motifs) family protein"
                     /protein_id="NP_191904.2"
                     /db_xref="GeneID:825520"
                     /db_xref="TAIR:AT3G63450"
                     /db_xref="Araport:AT3G63450"
                     /translation="

MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI"

     misc_feature    918..1127
                     /locus_tag="AT3G63450"
                     /note="RNA recognition motif (RRM) found in Arabidopsis
                     thaliana zinc finger CCCH domain-containing protein 46
                     (AtC3H46) and similar proteins; Region: RRM_AtC3H46_like;
                     cd12458"
                     /db_xref="CDD:409891"
ORIGIN      

agagagagagtgtgtgtgtgtgttttgttgtgaatttgattgcaaaaatccaaagtttgacgctttgacccactcacttgggagttggagcccagaagacacaacagtcactccactcttctttaactcttttttttatttaatttccccacaccacacgactcacgagggaagtggcaactttgatttttgcaagcagaggaggaagaagaagaagtagaaagaagcttaggtatggagtggagtggtacactggtactagagtgatgatggtggtaaggtagttgagaaagaaagcctttttagctttgctaaagtccaagacaagaaaccaaacatctttttgtacacaagacaagacaacaatagcagtgtttctttttcctgccaaagaaagattaagcgagagagagagagacaaggtctcatcgagcaaagagtgtgtttccatggatgtgtacgaagcaactaggatcgtgctctctagaatccagaacttagacccagctaatgcttccaagatcataggtcttctcctccttcaggatcacggtgagaaggagatgataaggttagctttcgggcctcagaatctccttcattctgtcatagccaaggccaaaaaggacctcgaagagcggctttctttcttgactccgagaaccgccgaagattttgagtccgatttagggttcggatggggtcaccgcaaagaggtgcttaggtccaactctgttccgccgagacttgccaatcagttcaccggttatccattctcccccaaaggtgtcaacttgcaacagagtgaagcccaaagagctgctgctttgatgatgggcgatgacttgcacaaattgggaatatggaggccagagaggatcgacctctcggccacggcctgcccggcgtctagacagatctatctgactttcccggctgacagtatcttcagggaagaagatgtttccgactacttcagtacgtttgggccagttcaggacgtgaggataccttaccagcagaagaggatgtttgggttcgtgaccttcatgtacccagagactgtgaagagcattctggccaaagggaaccctcactttgtgtgtcattccagggttcttgttaagccttacaaggagaaaggcaaagtcccagacaagactaagccatccagggacattatggatttccagcttggggggagggcttttcatgaagatctgctgtggaaaaggaggtttgaagaacgagctcttgagctgcagagcacaaggctgatgaatctgcagcttctcgacgtcgagaaacagtttcaactcaatttcgaccaaacactacttgtttctccacgactagtttcaaacaatcagagagtgtgcacaaaagagaatgatgaggatacaatcaaacttccagagagcttggaggatgataggctggtggatagcccaattgtatcaccgaaacaccattttctcgagtgtggggtagctgcagaaacaaagggttcaggcttgtcgtcgccatcttttgatcaggatgagtctagtacaggtacattgaaagagcctctcaagtccttgaagtgccaaatgccgaggttatcaatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaat

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