LOCUS       NM_112299               2758 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana ubiquitin-specific protease 25 (UBP25), mRNA.
ACCESSION   NM_112299
VERSION     NM_112299.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2758)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2758)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2758)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_112299.3.
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2758
                     /gene="UBP25"
                     /locus_tag="AT3G14400"
                     /gene_synonym="ubiquitin-specific protease 25;
                     UBIQUITIN-SPECIFIC PROTEASE 25"
                     /note="Encodes a ubiquitin-specific protease."
                     /db_xref="Araport:AT3G14400"
                     /db_xref="GeneID:820662"
                     /db_xref="TAIR:AT3G14400"
     CDS             306..2291
                     /gene="UBP25"
                     /locus_tag="AT3G14400"
                     /gene_synonym="ubiquitin-specific protease 25;
                     UBIQUITIN-SPECIFIC PROTEASE 25"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP576063.1,INSD:BP840905.1,INSD:EH978125.1,
                     INSD:ES116215.1,INSD:EG454292.1,INSD:AV532395.1,
                     INSD:ES056882.1,INSD:BP790098.1,INSD:AV442700.1,
                     INSD:DR195616.1,INSD:ES056379.1,INSD:BP794578.1,
                     INSD:AV551221.1,INSD:DR261226.1,INSD:BP665142.1,
                     INSD:DR195618.1,INSD:ES023180.1,INSD:AV548104.1,
                     INSD:EL195166.1,INSD:AV440649.1,INSD:DR195617.1,
                     INSD:EH862534.1,INSD:BP658364.1,INSD:BP655743.1,
                     INSD:ES026277.1,INSD:CB255814.1,INSD:BU636576.1,
                     INSD:DR261227.1,INSD:CD529336.1,INSD:EG455443.1,
                     INSD:EG455442.1,INSD:EL094744.1,INSD:ES206180.1,
                     INSD:BP653384.1,INSD:EL168009.1,INSD:ES173114.1,
                     INSD:EL165145.1,INSD:ES012955.1,INSD:CD534291.1,
                     INSD:BP830243.1,INSD:AV828809.1,INSD:EL996918.1,
                     INSD:BP816929.1,INSD:DR375829.1,INSD:AV535624.1,
                     INSD:CD529545.1,INSD:EG454291.1,INSD:ES195971.1,
                     INSD:EH869858.1,INSD:ES034817.1,INSD:BP781013.1,
                     INSD:BX839605.1,INSD:ES214307.1,INSD:AV565675.1,
                     INSD:EH944178.1,INSD:EG455436.1,INSD:EG483290.1,
                     INSD:EH800353.1,INSD:EG455437.1,INSD:AV802906.1,
                     INSD:AA404755.1,INSD:BP794729.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BT021128.1,INSD:AF302673.1,INSD:AY064992.1"
                     /note="ubiquitin-specific protease 25 (UBP25); FUNCTIONS
                     IN: ubiquitin-specific protease activity, ubiquitin
                     thiolesterase activity; INVOLVED IN: ubiquitin-dependent
                     protein catabolic process; EXPRESSED IN: 24 plant
                     structures; EXPRESSED DURING: 15 growth stages; CONTAINS
                     InterPro DOMAIN/s: Peptidase C19, ubiquitin
                     carboxyl-terminal hydrolase 2, conserved site
                     (InterPro:IPR018200), Peptidase C19, ubiquitin
                     carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST
                     Arabidopsis thaliana protein match is: ubiquitin-specific
                     protease 23 (TAIR:AT5G57990.1); Has 8659 Blast hits to
                     7314 proteins in 254 species: Archae - 0; Bacteria - 9;
                     Metazoa - 4447; Fungi - 1449; Plants - 1041; Viruses - 9;
                     Other Eukaryotes - 1704 (source: NCBI BLink)."
                     /codon_start=1
                     /product="ubiquitin-specific protease 25"
                     /protein_id="NP_566486.1"
                     /db_xref="GeneID:820662"
                     /db_xref="TAIR:AT3G14400"
                     /db_xref="Araport:AT3G14400"
                     /translation="

MGFKLQMSWMPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSLRLKKLRYNGNEPFNGNSVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKTLVTSNGTTSHEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKPHKFIRPKPRAEQAPLEDNLLSSKVEKAPLRPHAKVSISVNLGAKRVSPVNGRLSFHQDENIAPKANKENSVSVLPTKVNSGTERKFGTENGGNGVKENGSAPGSSNHKVALHPHERSNGSSNGGDHHKDNLHPCGSNGSQNGTAHPETERNGVSTTQSKGLCSSTKEDPCILLRKDESSRNELEAIKESLKKDALSHLRSCGWYDKVLISMHAKKRLRTEQSGGEDGSDLKRRLIEDVKSSLKSQIPEELKADLVNRIWEISKKKYS"

     misc_feature    372..1304
                     /gene="UBP25"
                     /locus_tag="AT3G14400"
                     /gene_synonym="ubiquitin-specific protease 25;
                     UBIQUITIN-SPECIFIC PROTEASE 25"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; Region:
                     Peptidase_C19E; cd02661"
                     /db_xref="CDD:239126"
     misc_feature    order(387..389,402..404,1185..1187,1236..1238)
                     /gene="UBP25"
                     /locus_tag="AT3G14400"
                     /gene_synonym="ubiquitin-specific protease 25;
                     UBIQUITIN-SPECIFIC PROTEASE 25"
                     /note="active site"
                     /db_xref="CDD:239126"
     misc_feature    2031..2261
                     /gene="UBP25"
                     /locus_tag="AT3G14400"
                     /gene_synonym="ubiquitin-specific protease 25;
                     UBIQUITIN-SPECIFIC PROTEASE 25"
                     /note="Transcription factor e(y)2; Region: EnY2;
                     pfam10163"
                     /db_xref="CDD:462972"
ORIGIN      

atcgcgaagggattgtggggtttgttgctgggcgggtctcttccctcggcagttaccttcatcgaattcgatcttcatcttcttccttccccaactctttcaaattcgtgaaaatcttcctttaatttcgactacaaattgattggaggaagcccccaaaacgtgaattagaagagaaagagaaaagcgaggaaaacgcgtggtgacaaaagatgcgatcgcagctgttggcttggccgcggcggcgagtcagcgatgagcggttgcttggttggttttctccggcggagaataaccgattttgaatgggatttaaactgcagatgagctggatgccgagtctactgagtcaaaagcgtaggaatggtcctcccttagggttacggaatctcggcaacacctgttacctcaatagtgtccttcagtgtctcactttcactcctcctctcgctaatttctgccttactcacaaacactcctctcactgcgacacatatgtggatggagagaggaaaagggattgtccattttgcatagttgagaaaagaatagcaaggtctcttagtgtggatctaactaccgatgcgcctaacaagatttcaagctgtctcaaaatttttgctgagcattttaagcttggtcgtcaagaggatgctcatgagttcttgcgctatgtcattgatgcatgccacaatacgtctctcagactcaagaagttgcgatacaacggtaacgagccctttaatggcaatagtgtcgtgaaggagatttttggtggtgctttgcagagccaggtcaagtgtttgtcttgtggtgcggagtctaataaagccgatgagattatggatatcagtcttgagattttgcagagtagctctgtgaaggagtcattgcaaaagttctttcaatcagagattttagatggcaacaataagtatagatgcgagtcctgtgaaaaactggtgacggcgaggaagcagatgtctatactgcaagcgcctaatatccttgttatccaattgaaaaggtttgggggcatttttggtgggaagattgataaagccatttcatttggtgagattctggttctctcgaacttcatgagtaaagcaagcaaggaccctcaaccggaatacaagctctttgggataattgtgcactcaggattttctcctgaatctgggcactattatgcatacgttaaggattccttgggtcgatggtattgctgcaatgattcgtttgtctcgctctccaccttgcaggaggttttatcagagaaagcttatatcctgtttttcagccgttcaaaccagaggccagcgtctgctaaaactctggtaacatccaatgggactacatctcatgaagttaatggctgtgagacatcaaatccccagaagtttattgggccccttaatggtttcaacatgaaacctcaagccgagcagtccttccagaagggtaacctggcttcttcaaagccccataaatttattaggcccaaaccacgagccgagcaggccccactagaggataacctgctttcttccaaagttgaaaaggcgcctttaaggccacatgcgaaagtcagtatatctgtcaaccttggtgccaaaagggtctctcctgtcaatggtagactttctttccaccaagatgagaacatagctccaaaggcaaacaaagagaatagtgtatcagttttgccgactaaagttaactctggtacggagagaaagtttggtactgaaaatggtggcaatggagttaaagaaaacggcagtgcaccaggtagtagtaatcataaagtggcattgcatcctcatgagcggagtaatggctccagcaatgggggtgatcaccacaaggataacttacatccatgtggaagtaatggctcacaaaatggaactgctcaccccgaaactgagaggaacggtgttagtaccacccaatccaaaggcttgtgttcttcaacaaaggaagacccctgcattttgctgagaaaagacgaatcatctcggaatgaacttgaagcaataaaagagagcctgaaaaaagacgcgctgtcacatctacgttcatgcggatggtatgacaaggttctcatctccatgcatgccaagaagagattgcgtacagagcaatcaggtggagaagatggtagcgacttgaaaaggaggttgattgaagatgtgaaatcaagtttgaaatcacagattccagaggagttgaaagcagatctggtaaatcgtatctgggagattagcaagaagaagtactcgtgaaccattgttttttgcttcaacaaaaatgactcgaatctctggaagcatgaagcctctacttggtcccttcacacacacactcctcattcctcatttcatcattgcttaacccatccggctagtctgattatacagagtgagcggatcgagattttttcctgcgactgtgatgatggtgaagtgagtttttttcttttctattattattacatttttggaagagagtaaaagtaattaccggaaaaaaaaagaaaaaaaaaacagatctcattctgtataatataacgccttcttgttttttgcctcttatcgatgaagctttacacaaatatacaagtcctgtggaaatttttagtataagaacgttcttgaatttgtgtattgtatttgtggtttttcgttaaacatattaacatcggacatggtttcgtgctttcgttccagtaaaatatatggatggttcgttg

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