LOCUS       NM_105024               3330 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana root hair specific 8 (RHS8), mRNA.
ACCESSION   NM_105024
VERSION     NM_105024.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3330)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 3330)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3330)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3330)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 3330)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_105024.3.
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..3330
                     /gene="RHS8"
                     /locus_tag="AT1G63450"
                     /gene_synonym="F2K11.17; F2K11_17; root hair specific 8;
                     XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1"
                     /note="Encodes a xyloglucan-specific
                     galacturonosyltransferase (XUT1) that forms the
                     beta-d-galactosyluronic acid-(1->2)-alpha-d-xylosyl
                     linkage."
                     /db_xref="Araport:AT1G63450"
                     /db_xref="GeneID:842651"
                     /db_xref="TAIR:AT1G63450"
     CDS             1284..3278
                     /gene="RHS8"
                     /locus_tag="AT1G63450"
                     /gene_synonym="F2K11.17; F2K11_17; root hair specific 8;
                     XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1"
                     /inference="Similar to RNA sequence, EST:INSD:BP829488.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX816851.1,INSD:BX815960.1,INSD:AK230135.1"
                     /note="root hair specific 8 (RHS8); FUNCTIONS IN:
                     catalytic activity; LOCATED IN: membrane; EXPRESSED IN:
                     root hair, root; CONTAINS InterPro DOMAIN/s:
                     Exostosin-like (InterPro:IPR004263); BEST Arabidopsis
                     thaliana protein match is: Exostosin family protein
                     (TAIR:AT5G41250.1); Has 717 Blast hits to 713 proteins in
                     32 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi -
                     0; Plants - 686; Viruses - 0; Other Eukaryotes - 25
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="root hair specific 8"
                     /protein_id="NP_176534.2"
                     /db_xref="Araport:AT1G63450"
                     /db_xref="GeneID:842651"
                     /db_xref="TAIR:AT1G63450"
                     /translation="

MSLSKHLQKLVHKRESKKQPNKKMPVSVSKLRRPRTSKKTETGNPEKTLKDPRTCCNNLFSIFSARSFLYRVPLTILFLFLIYLWSTSTTVISGNVVHICISSRKLTDLYCLTAGSQPALRAPVNNFTAPASEDVVTSKEEKNVFVLGKDGDKGFAENETFEGGKDSDKSTVGENLTINKNETFTGETSGERVSILNQDAKPIHEKNLDSVLDQDSLPKNEIDQDFIIDWDPETGEERYRYFKAKTEDEETGLKSTEEYIQIQRTWLSMGNNRKKPGSCEGKGVYVYDLPSKFNKDLLRECSDMVPWADFCNYFKNDAFGELMESMGKGWFRTHQYSLEPIFHSRILKHPCRVHNETQAKLFYVPFYGGMDVLRWHFKNVSSDVKDVLPIEIVKWLGSKKSWRKNSGKDHVFVLGKISWDFRRVDKYSWGSSLLEMQEMKNPTKLLIERNPWEVNDIAIPHPTYFHPKTDTDIAIWQNKILGKPRRSLISFAGAARPGNPESIRSILIDQCRSSPNQCRFLNCTDGGCDKSESVIELFRDSEFCLQPPGDSPTRKSIFDSLILGCIPVIFDPYSAYYQYTWHLPEDHRRYSVYINKEDVKLKRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAKFERFRDAFDITMDSLFKKIAKTV"

     misc_feature    2115..3113
                     /gene="RHS8"
                     /locus_tag="AT1G63450"
                     /gene_synonym="F2K11.17; F2K11_17; root hair specific 8;
                     XUT1; XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1"
                     /note="Exostosin family; Region: Exostosin; pfam03016"
                     /db_xref="CDD:397245"
ORIGIN      

ttcgttgcttccctttttcctatttggaaaaggaaaatatttgccttattataagacaagagcagagaggacacaaataaagataagaagattaggattatactttgaaacgtgataatgagaactagacatggcagcaaaaggacaaagatagagaaggagtctcgagtaagtcaagtaacgtcggagacaagaagagattgcctgtgaagtccgtagctaagtttctcgttgtatccaagttattggcaacaattatccgcagtcgatatttcattagatcgtttccctttaggtcttcgcttcagccacatatactctttgcattcaaatatttagataaccaaaacggacgccagatttgtaacttcttcacgtattcctcgacatcaaccaagaatctaccgtattatttatctcttagtgcgacatgctcaatcccgagtccgtattgccgcaggatcaataatgttccttattacgttaatggtttgataagtcttggatgtggacgagaacaatttatatgcaaccctagcacaagtaagtacatacctttacccaaagtgaaatcaagaaaaaagattatccaaaactttttcgggtatgatccagtcaatggtgagtataaattaagtattgtgcatgtcggaaaaagtgaatgattactgggatggtccatcttttgaacatcaagtattcacattgggaggagttgatagatcatggagaatgattgaatgcaataacaatcttcttcatcgtcccaaaactaacggtgagtgcatcaatgggacaatgttgttgcaaggagaaaagtaaacatttctgcttcgttttcttctcgtatactatatgtcaactttgtgttttatagattccttttttttccggattggttgcataacccctactttgaattataaatttaagttgaccaaaaaaggccagctagatagatcttgtgttattatggatatattcactcgcatccaaagtcaaagtgaatattccacaaccatatataagagaagttgttttccaaaattttaacttggaggcacgttaatttaattcgttttaactaccaaaacttggattattaatttcactataagattcaatgaatactaaactaacaaacattgctatataatattaacatatgcatctatttctattatcaggtttccaaatcaaatgatttaagtttgttacaacaagacgtgcacactcattgatcattttactacaattatgtgacgacgtgagtgcatgtccagatgtccctatcaaaacatctacaaaagcttgtacacaaaagagaatccaaaaaacaaccaaacaagaaaatgcctgtctccgtctcaaagttgagacgaccaagaacgtccaaaaagaccgaaaccggaaatcccgaaaaaacacttaaagatcctcgtacttgctgtaataaccttttttcgatcttttccgccagatcatttctttatcgtgtacctctcacgattctctttcttttcttgatttatctttggtccacttccacgaccgttatctctggtaacgtcgttcatatatgcatctcttcgcggaagctcactgacctttattgcctcactgccggttctcagcccgctttacgtgcaccagtcaacaatttcactgcgccggctagtgaagatgtggtaacaagtaaagaagagaagaatgtttttgttcttggtaaagacggagacaagggtttcgcagaaaatgaaaccttcgagggaggaaaagattcagacaaatctacggtcggagaaaacctcaccatcaataagaacgaaactttcacaggagaaacctccggagaaagagtttccattcttaatcaagatgctaaacccatccatgaaaagaatcttgattccgttcttgatcaagattctttacccaaaaacgagattgatcaagatttcatcattgattgggatccagaaactggcgaagaacgataccgatatttcaaagcgaagaccgaagacgaggagaccggtctaaaatctacggaagagtatattcaaatacagagaacttggttatcgatgggaaacaaccgcaaaaagccgggatcttgcgaaggaaaaggtgtatacgtttacgatttaccatctaaattcaacaaagatttgttgagggaatgctccgatatggttccatgggctgatttttgcaactacttcaagaacgatgcgtttggtgaactgatggagagtatgggtaaaggctggttcagaacgcatcagtattcacttgagccgatatttcactctagaattttgaagcatccatgtagggttcataacgagactcaagcgaagctcttctatgtgcctttctatggcggtatggatgttttgagatggcatttcaagaacgtttcaagcgatgtgaaagatgttttgccgattgagattgttaaatggctcggatcgaagaaatcatggaggaaaaactccggaaaagatcatgtttttgttctcggaaagatctcttgggattttaggagggttgataagtattcttggggctcaagcttacttgagatgcaagaaatgaaaaaccctacaaagcttctcatcgaacgtaatccatgggaagtcaacgacatcgcgatacctcatcccacatacttccacccgaaaactgacaccgatatcgccatatggcaaaacaaaatacttgggaaacctcgtcggagcctaattagcttcgctggtgcagcaagacccggtaaccctgagagcatccggtcaatattgattgaccaatgcagatcgtctccaaaccaatgccggtttttgaattgtaccgatggaggctgcgataaatcggaatcggttatcgagcttttccgagattcggagttctgccttcaaccgcctggagacagtccaacaaggaaatcgattttcgattccctcatattaggttgtattccggtgatatttgatccgtacagcgcgtattaccagtacacgtggcatttaccggaggatcaccggagatattcggtgtatataaacaaagaagatgtgaagttgaagagagtgaatgtgattgagaagttaatgtcaaagactctaagggaaagagaggacatgaggagttacattgttcatgagcttttgcctggtttggtctatggagattctaatgctaagtttgagagatttcgagatgctttcgatattactatggatagtttattcaagaagattgcaaaaactgtataactttcgtttttcgtttgattttaattgtcaaattttcaaatgtagttcgttt

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