LOCUS       NM_103941               1079 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RmlC-like cupins superfamily protein
            (AT1G50590), partial mRNA.
ACCESSION   NM_103941
VERSION     NM_103941.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1079)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1079)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1079)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1079)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_103941.1.
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..>1079
                     /locus_tag="AT1G50590"
                     /gene_synonym="F11F12.9; F11F12_9"
                     /db_xref="Araport:AT1G50590"
                     /db_xref="GeneID:841481"
                     /db_xref="TAIR:AT1G50590"
     CDS             147..1079
                     /locus_tag="AT1G50590"
                     /gene_synonym="F11F12.9; F11F12_9"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL216038.1,INSD:EH843949.1"
                     /inference="similar to RNA sequence, mRNA:INSD:BT033103.1"
                     /note="RmlC-like cupins superfamily protein; CONTAINS
                     InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778),
                     Pirin (InterPro:IPR012093), Cupin, RmlC-type
                     (InterPro:IPR011051), Pirin, N-terminal
                     (InterPro:IPR003829); BEST Arabidopsis thaliana protein
                     match is: RmlC-like cupins superfamily protein
                     (TAIR:AT2G43120.1); Has 7420 Blast hits to 7420 proteins
                     in 1472 species: Archae - 66; Bacteria - 4684; Metazoa -
                     72; Fungi - 219; Plants - 125; Viruses - 0; Other
                     Eukaryotes - 2254 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RmlC-like cupins superfamily protein"
                     /protein_id="NP_175474.1"
                     /db_xref="Araport:AT1G50590"
                     /db_xref="GeneID:841481"
                     /db_xref="TAIR:AT1G50590"
                     /translation="

MPISEKSSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFLVLDEFSVSAPAGFPDHPHRGFETVTYMLEGEILHEDCEGHKGVIREGGLQWMTAGKGIVHSEMPSSNSNGITHNKGLQLWINLSSRQKLVEPSYQEIESKDIAETEKDGVRVRVIAGEWNGVKSKICTRTPTMYLDFTLSPGSRISQPIPLHWNAFVYVLQGHGHFGDSKLQHSAAAAHHLLVLGLGGDMLEAWNGSDSGLPLRFILVAGEPIGEPMVQFGPFVMNTQEEIDETIDDFENFRNGFEKARHWKSQAASALGLF"

     misc_feature    210..1004
                     /locus_tag="AT1G50590"
                     /gene_synonym="F11F12.9; F11F12_9"
                     /note="Redox-sensitive bicupin YhaK, pirin superfamily
                     [General function prediction only]; Region: YhaK; COG1741"
                     /db_xref="CDD:441347"
ORIGIN      

tcatcttattatttttggggttacatcatcttcttaattttggccaactgtcaatacaacaactctttccttaactataaatacatcttcatcagagattcaacaaataaacatatttttcactaactctctctaagagattcaagatgccaatctcagagaaatcttctgctactaatacgaggttagttgttaagaagcttttcgccagacagctacatgaaggatttggtgctgttgtaagaagaagcatcggaaggtttgagttcagatacttcgacccatttcttgtcctggatgaattctcagtttcagctcctgcaggattcccagatcatccacacagaggatttgagacagtcacttacatgttagagggagagattttgcatgaagactgtgaaggacacaaaggagtaataagagaaggaggattacaatggatgactgcaggaaaaggcattgttcattctgaaatgccttcttctaattccaatggcattactcacaacaagggcttgcagctttggatcaatctctcctcaagacaaaaactagtggagccgagttatcaagagatagagagtaaagacatagcagaaacagagaaagatggtgtgagagttagagtcatagcaggagaatggaatggagttaagtcaaagatctgcacaagaacgccaacaatgtatttagacttcactctctcgccgggttctcgaatctctcaacccattccacttcactggaacgcgtttgtctatgttcttcaaggccatggtcactttggggattccaagttacaacattcagccgctgctgcgcaccacttgctggttctaggcctaggtggtgacatgttagaggcttggaacggttctgattccggtttgcctcttcggtttatccttgtggctggtgagcctataggtgaaccaatggttcagtttggtccttttgttatgaacacacaagaagagattgatgagaccattgacgactttgagaattttagaaatgggtttgaaaaagctagacattggaagtctcaagctgcttctgccttgggactgttctga

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