LOCUS       NM_102460               1330 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana homeobox protein 23 (AtHB23), mRNA.
ACCESSION   NM_102460
VERSION     NM_102460.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1330)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1330)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1330)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1330)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_102460.3.
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1330
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /note="Encodes a homeodomain leucine zipper class I
                     (HD-Zip I) protein."
                     /db_xref="Araport:AT1G26960"
                     /db_xref="GeneID:839587"
                     /db_xref="TAIR:AT1G26960"
     CDS             300..1067
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR750837.1,INSD:BP801272.1,INSD:EL986445.1,
                     INSD:AV541106.1,INSD:DR750838.1,INSD:DR380281.1,
                     INSD:EH800333.1,INSD:DR227492.1,INSD:DR299078.1,
                     INSD:EL017543.1,INSD:T42871.1,INSD:AV551902.1,
                     INSD:AA395245.1,INSD:DR750893.1,INSD:EH945538.1,
                     INSD:ES018084.1,INSD:AU226750.1,INSD:BP801528.1,
                     INSD:AU235961.1,INSD:DR750894.1,INSD:DR751323.1,
                     INSD:EH965753.1,INSD:EG527791.1,INSD:BP577827.1,
                     INSD:BP576242.1,INSD:DR751177.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK228056.1,INSD:AY084913.1,INSD:BT009727.1"
                     /note="homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA
                     binding, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: response to gibberellin
                     stimulus, regulation of transcription, DNA-dependent;
                     LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970),
                     Homeobox (InterPro:IPR001356), Homeodomain-like
                     (InterPro:IPR009057), Helix-turn-helix motif, lambda-like
                     repressor (InterPro:IPR000047), Leucine zipper,
                     homeobox-associated (InterPro:IPR003106),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: Homeobox-leucine zipper protein
                     family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053
                     proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa
                     - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other
                     Eukaryotes - 225 (source: NCBI BLink)."
                     /codon_start=1
                     /product="homeobox protein 23"
                     /protein_id="NP_564268.1"
                     /db_xref="Araport:AT1G26960"
                     /db_xref="GeneID:839587"
                     /db_xref="TAIR:AT1G26960"
                     /translation="

MSCNNNGLAFFPENFSLQNHHQEEEDHPQLLQDFHGFLGKRSPMNNVQGFCNLDMNGDEEYSDDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREPIESINLNKETEGSCSDRSENISGDIRPPEIDSQFALGHPPTTTTMQFFQNSSSEQRMVKEENSISNMFCGIDDQSGFWPWLDQQQYN"

     misc_feature    order(510..518,522..524,573..575,591..593,630..632,
                     636..641,648..653,657..665,669..674)
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    510..671
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(510..512,519..521,639..641,648..653,660..662)
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    675..800
                     /gene="AtHB23"
                     /locus_tag="AT1G26960"
                     /gene_synonym="HB23; homeobox protein 23; T2P11.15;
                     T2P11_15"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:460477"
ORIGIN      

gggattttccaaaacatacaaaagcccatattccacccctccaaagactataatcatcccatgtctacctctctgtctcatcggctttgagtcttgtctcctattttatatactcatataataaacaaaataaaaccaaattttctaatctagctagtatttagcctataagtggtgtatactcagtcttctaattcatttcaccaccatccttcttcttctttatttagttttctttctgtactttgaaccaagacaaggtggtggagaggagaagaagaaaacaaccaacaagagacatgtcttgtaataataatggcttagctttcttccctgaaaatttcagtctccaaaaccatcaccaagaagaagaagatcaccctcaacttcttcaagacttccatgggtttctaggtaaaagatctccaatgaacaacgtgcaagggttttgtaatctagatatgaacggagatgaagaatattcagacgatggatctaagatgggagagaagaagaggagattgaacatggaacaattgaaggcactagagaaggactttgagcttggtaataaacttgaatcagatcgaaaattagagctagctcgtgccttgggattgcaacctagacaaattgctatatggttccaaaacagaagagctcgatccaaaaccaagcagcttgagaaagactatgacatgcttaagcgtcaattcgaaagtctcagagatgagaacgaagttcttcaaactcaaaatcaaaagcttcaagctcaggtaatggcattgaaaagcagagaaccaatagaatcaatcaatctgaacaaagaaacagaaggatcatgtagtgacagaagtgagaacatttctggtgacatcaggccaccggagatcgatagccaattcgccctaggccatccaccgacaactacaacgatgcagttttttcagaattcatcgtcagaacagagaatggtgaaagaagagaacagtatcagtaacatgttctgtggaattgatgaccagtctgggttctggccatggcttgaccagcaacaatacaattgaatgtggtcgatctgttcttgtttgtattaaaattttcgttttctttaagtggtcagatgaaccaattcatgtttcaagaatctatatttagtctatatgcaccaactaagctagtagtttttttgggtaatgtgatgtaagagaattaatgggggaaatattcatcatattatatgataattaatcaatcatatgggccatatgattagacattaaaaaaagtctgaaccatgtgcttttatatcgtacaactaatatccaga

//