2024-09-08 10:59:37, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_070776 3217 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans PAZ domain-containing protein (wago-10), mRNA. ACCESSION NM_070776 VERSION NM_070776.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3217) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3217) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3217) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3217) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On May 27, 2020 this sequence version replaced NM_070776.4. FEATURES Location/Qualifiers source 1..3217 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene 1..3217 /gene="wago-10" /locus_tag="CELE_T22H9.3" /db_xref="GeneID:178560" CDS 59..3031 /gene="wago-10" /locus_tag="CELE_T22H9.3" /standard_name="T22H9.3" /note="Confirmed by transcript evidence" /codon_start=1 /product="PAZ domain-containing protein" /protein_id="NP_503177.1" /db_xref="GeneID:178560" /translation="
MPTTVQNPSPTGFLPQIPFRIPKRTRRSSEVDVPATKRPAPPLTSSTSLPTRDSFSIIETRDVQLNMFALNISGMPRKIQRFHVDTLIKGKNGKIFNVNHGVLANSGDINSHNKRLAQHALMQKFHKKRRELFGQHDYHILAYDCANTLYLPDGVYLGRNEEECTFKSDDFSPEQWNITSKLSRKKDYTYVMKIRPSGFIYTSGEEASEVANRMELTRCVEIVTSQKLNNSDYCQFGNDTFSFRAQPVSEPDATSEIRSGFAKVSRIVEGRNGKNEMLMAIDTKASPFYKSTSVLNFVCGKYLEKRGSSRNDYRGRGDYNRKKTGGGSTDAPDHQDVAEVERSLEYRENRQQIEEALKGLLVSAAHLKNSTNLIMISRVAETNSETTKFMTNNGEREISVADHYLEAYNYRLKYPKMPLVVSKRFRDECFYPMELLQVAPGQRIKDHKMSAAVQMAMKGQKSTLPQKHVDLVKHVLSRNLKLDRNLYMDAFGIKLESAELVKLQSKILPPPQIKFKDEVYMPKMGNPVFRTNGRFVDPADINAVAIVVFDRAIDMRQAENFCDRLSCYCRENGITVKKSSRDWPIREINSEDSVAIKNAMEKWFSKGVNILVAIAKEKKPDVHDVLKYYEASVGLQTIQVCKQTVDMMLSSGGRQTADNVMRKFNLKCGGTNFFVQIPRSVNGRTVCADAHLLNEKLFERVQFIGFDISHGASRTLFDRSTGKMDGEVSIVGVSYSLSHSTHLGGFAYMQTQKEYKLQKLDEVFPKCVDSYRNHTGRLPSKIVIYRIGAGEGDFKRVKEEVDKIRGTFNRIQPDYRPQLVVIIAQRDSHVRVFPAHITGSKAGQQNVTSGTCVDSVITSLGHQEFILSSQMPLLGTVRPCKYTILTNDPNWTKTEITHLTYFRAFGHQVSYQPPSFPDVLYAAENLAKRGRNNYKVHQRFVNLQAVERSVIAENSDLVSEEMREQLAAAIVDEMSAAINGMTISKRNFWA"
misc_feature 1097..1375 /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1178..1180,1223..1225,1256..1258,1268..1270, 1322..1324,1343..1345,1349..1351) /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature <1490..1603 /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="Argonaute linker 2 domain; Region: ArgoL2; pfam16488" /db_xref="CDD:465136" misc_feature 1553..2854 /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component...; Region: Piwi-like; cd02826" /db_xref="CDD:239208" misc_feature order(1925..1927,1937..1939,1964..1975,1982..1984, 2024..2026,2033..2035,2045..2047,2057..2059) /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:239208" misc_feature order(2177..2179,2183..2185,2417..2419,2828..2830) /gene="wago-10" /locus_tag="CELE_T22H9.3" /note="active site" /db_xref="CDD:239208" ORIGIN
aatttttctttgttttttgttcgaataaatttattgctcctgaaactgtgttcaagttatgccgactaccgtccaaaatccgtccccaactggatttcttccgcagatcccattcagaatacctaaaaggactcgccgcagctctgaagttgatgtccctgcaacgaaaagacccgctccaccgctcacctcttcaacatctcttcccactcgcgactctttttcgatcatcgaaaccagggatgttcagctcaacatgttcgccttaaacatttccgggatgccacgcaagattcaacgtttccacgtggatactctgattaagggaaaaaacggaaagattttcaacgtgaatcatggagttttggcaaattctggagatataaactctcacaacaaacgtctcgcccagcatgcattgatgcagaagttccacaaaaaacgccgagagctttttggccaacacgactatcacatccttgcctacgactgtgcgaacaccctgtacctccccgatggtgtctacctgggccgaaatgaggaagaatgcacgttcaagtccgatgatttttcaccagaacagtggaatatcacttcaaaattgtctcgcaaaaaagattacacgtatgttatgaaaattcggccatccggattcatttacaccagtggtgaggaagcatcggaggtggcaaatcgcatggaattaactcgctgcgttgagatcgtcacttcccagaagctcaacaactctgattactgtcaatttggaaatgacacattctctttccgtgctcaaccagtctccgaaccagatgccacttcagaaatccgatcaggattcgccaaggtctcccgtatcgttgaaggtcgcaacgggaagaatgagatgctcatggcaattgacacaaaagcctctccgttctataaaagcaccagtgtcctgaattttgtgtgcggaaaatatctggagaagaggggaagctcacgcaatgactatcgaggcagaggtgactacaatcggaagaagaccggaggaggatccactgatgctccggatcatcaggatgttgcagaagttgagagatcactggagtaccgcgagaacagacagcagatcgaagaagctcttaagggattgctggtgtcagcggctcatttgaagaattccaccaatttgattatgatctcaagagtagctgagacaaattctgaaaccaccaagttcatgacgaacaatggagaacgcgaaatttccgtcgccgatcactatcttgaagcctacaactaccgactcaagtacccaaaaatgccactggtggtctcgaaacgattcagagacgaatgcttttatccaatggaattgctgcaagttgctccgggacagcgcatcaaagatcacaagatgagtgcggcggtgcagatggcaatgaaaggacagaagtcgacgcttccccagaaacacgtggatcttgtcaagcacgttctctcccgtaatctgaaactggatagaaatctctatatggacgcgtttggaatcaagctggagtccgcggagctggtgaagctgcagtccaagattcttccgccaccacagataaagttcaaggacgaggtgtacatgccgaagatgggcaacccggtcttccgtacgaatggtcgttttgtggatccggctgatatcaatgcagtagccattgtcgtctttgatagggcaattgacatgagacaagcagagaatttctgcgatcgtctgagctgttactgtcgtgagaatggaatcaccgtcaaaaaatcttcgagagactggccgatccgcgagattaacagcgaggacagcgtcgcaatcaagaatgcaatggaaaagtggttcagcaaaggagtgaatattctggttgcaattgccaaagagaagaagcccgatgttcacgatgtcttgaagtattatgaggcttccgtcggcttgcagactattcaggtttgcaagcagaccgtcgatatgatgctgagctccggaggccgtcaaactgcggataacgttatgagaaagttcaatttaaagtgtggaggaacgaatttctttgtccaaattccaagatctgtcaatggaaggactgtctgtgcggatgctcacttgctcaatgagaagctcttcgaacgtgtccagttcatcggattcgatatctcacatggagcttctcgtacgcttttcgaccgtagcacggggaaaatggatggggaagtttcgatcgttggcgtctcctactccttgtctcactcgacacatctcggaggcttcgcctacatgcagactcagaaagaatacaaactgcagaagctcgacgaggtattcccgaaatgtgttgattcgtatcgaaatcatactggccgacttccttcaaaaatcgtcatctatcgaatcggagctggagagggagacttcaagcgagtcaaggaagaagtcgataagattcgaggaacctttaataggatccagcccgactatcgtccgcagctcgtcgtcatcattgctcagagagattctcacgttcgggtctttccggcacacataactgggtcaaaagctggacagcaaaatgtgacgtctggaacttgtgtggatagtgtgatcacttcgttgggccatcaggagttcattttgtcctcgcagatgccgctattgggaaccgtccgtccttgcaagtacacaattctcaccaatgaccccaactggaccaagactgagatcacacatctcacttatttccgagcttttggccatcaagtatcctatcagccaccatcgttccctgatgtgctctacgccgctgagaatctcgccaagagaggaagaaacaactacaaagttcatcaacgattcgttaatttgcaagctgtcgagcgtagtgtgattgcggagaattcggatcttgttagcgaggagatgcgcgagcaactcgccgctgcaattgtcgatgaaatgtccgctgcgatcaatggaatgaccatctcgaaaaggaacttttgggcttgaactcttcatttcccgattttttttttaatcaatttcctgtctttcatccccaacaactcgtatgccatcttgatttttttctctttgaaaatgtgttaatgtgcccaaaaatgaaattgtattgtgttaatgcaagtaatattttattaaatttaatttcaataatagaataaatttttagttttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]