2025-07-03 11:38:54, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NM_031699 3223 bp mRNA linear ROD 31-MAR-2024 DEFINITION Rattus norvegicus claudin 1 (Cldn1), mRNA. ACCESSION NM_031699 VERSION NM_031699.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3223) AUTHORS Chang,R., Su,Y., Kong,H., Wang,F., Xing,Y., Jiang,L. and Xin,H. TITLE Upregulation of SEMP1 Contributes to Improving the Biological Functions of Trophoblast via the PI3K/AKT Pathway in Preeclampsia JOURNAL Mol Biotechnol 66 (3), 531-543 (2024) PUBMED 37277581 REMARK GeneRIF: Upregulation of SEMP1 Contributes to Improving the Biological Functions of Trophoblast via the PI3K/AKT Pathway in Preeclampsia. REFERENCE 2 (bases 1 to 3223) AUTHORS Ma,T., Gu,J., Zhao,Y., Li,S., Zou,D. and Ge,D. TITLE EZH2-mediated suppression of CLDN1 leads to barrier dysfunction in PPI-refractory gastroesophageal reflux disease JOURNAL Dig Liver Dis 54 (6), 776-783 (2022) PUBMED 34789399 REMARK GeneRIF: EZH2-mediated suppression of CLDN1 leads to barrier dysfunction in PPI-refractory gastroesophageal reflux disease. REFERENCE 3 (bases 1 to 3223) AUTHORS Xie,Y., Tan,J., Qin,Y., Cao,Y., Wang,Y., Li,A., Wang,Z., Qiao,Z. and Yan,Z. TITLE MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1 JOURNAL Int J Med Sci 19 (3), 511-524 (2022) PUBMED 35370461 REMARK GeneRIF: MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1. Publication Status: Online-Only REFERENCE 4 (bases 1 to 3223) AUTHORS Ben-Kraiem,A., Sauer,R.S., Norwig,C., Popp,M., Bettenhausen,A.L., Atalla,M.S., Brack,A., Blum,R., Doppler,K. and Rittner,H.L. TITLE Selective blood-nerve barrier leakiness with claudin-1 and vessel-associated macrophage loss in diabetic polyneuropathy JOURNAL J Mol Med (Berl) 99 (9), 1237-1250 (2021) PUBMED 34018017 REMARK GeneRIF: Selective blood-nerve barrier leakiness with claudin-1 and vessel-associated macrophage loss in diabetic polyneuropathy. REFERENCE 5 (bases 1 to 3223) AUTHORS Chen,M., Hou,P., Zhou,M., Ren,Q., Wang,X., Huang,L., Hui,S., Yi,L. and Mi,M. TITLE Resveratrol attenuates high-fat diet-induced non-alcoholic steatohepatitis by maintaining gut barrier integrity and inhibiting gut inflammation through regulation of the endocannabinoid system JOURNAL Clin Nutr 39 (4), 1264-1275 (2020) PUBMED 31189495 REFERENCE 6 (bases 1 to 3223) AUTHORS Duffy,H.S., John,G.R., Lee,S.C., Brosnan,C.F. and Spray,D.C. TITLE Reciprocal regulation of the junctional proteins claudin-1 and connexin43 by interleukin-1beta in primary human fetal astrocytes JOURNAL J Neurosci 20 (23), RC114 (2000) PUBMED 11090614 REFERENCE 7 (bases 1 to 3223) AUTHORS Lippoldt,A., Liebner,S., Andbjer,B., Kalbacher,H., Wolburg,H., Haller,H. and Fuxe,K. TITLE Organization of choroid plexus epithelial and endothelial cell tight junctions and regulation of claudin-1, -2 and -5 expression by protein kinase C JOURNAL Neuroreport 11 (7), 1427-1431 (2000) PUBMED 10841351 REFERENCE 8 (bases 1 to 3223) AUTHORS Furuse,M., Sasaki,H. and Tsukita,S. TITLE Manner of interaction of heterogeneous claudin species within and between tight junction strands JOURNAL J Cell Biol 147 (4), 891-903 (1999) PUBMED 10562289 REFERENCE 9 (bases 1 to 3223) AUTHORS Kubota,K., Furuse,M., Sasaki,H., Sonoda,N., Fujita,K., Nagafuchi,A. and Tsukita,S. TITLE Ca(2+)-independent cell-adhesion activity of claudins, a family of integral membrane proteins localized at tight junctions JOURNAL Curr Biol 9 (18), 1035-1038 (1999) PUBMED 10508613 REFERENCE 10 (bases 1 to 3223) AUTHORS Furuse,M., Fujita,K., Hiiragi,T., Fujimoto,K. and Tsukita,S. TITLE Claudin-1 and -2: novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin JOURNAL J Cell Biol 141 (7), 1539-1550 (1998) PUBMED 9647647 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAXUCZ010000011.1. On Nov 27, 2020 this sequence version replaced NM_031699.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC061992.1, SRR26360190.1055662.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760383, SAMEA5760386 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-402 JAXUCZ010000011.1 87926376-87926777 403-567 JAXUCZ010000011.1 87935114-87935278 568-652 JAXUCZ010000011.1 87937274-87937358 653-3223 JAXUCZ010000011.1 87938963-87941533 FEATURES Location/Qualifiers source 1..3223 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="11" /map="11q22" gene 1..3223 /gene="Cldn1" /note="claudin 1" /db_xref="GeneID:65129" /db_xref="RGD:68422" exon 1..402 /gene="Cldn1" /inference="alignment:Splign:2.1.0" CDS 180..815 /gene="Cldn1" /codon_start=1 /product="claudin-1" /protein_id="NP_113887.3" /db_xref="GeneID:65129" /db_xref="RGD:68422" /translation="
MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFVISGLATLVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLSCSCPRKTTSYPTPRPYPKPTPSSGKDYV"
misc_feature 192..725 /gene="Cldn1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" misc_feature 201..263 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 423..485 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 525..587 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 669..731 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 747..812 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 807..812 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); Region: Interactions with TJP1, TJP2, TJP3 and PATJ. /evidence=ECO:0000250" exon 403..567 /gene="Cldn1" /inference="alignment:Splign:2.1.0" exon 568..652 /gene="Cldn1" /inference="alignment:Splign:2.1.0" exon 653..3223 /gene="Cldn1" /inference="alignment:Splign:2.1.0" ORIGIN
cacttccagactccaccaccgacccggaccagaagccaggagcctcgcccgcagccgcacagggagcaggggtatcagcgctaacctcctggctgagactccatcaccttcggggagcccaagcgcgcactttgcaaactccgctttctgcacctgccactgagcctcagaaaagagccatggccaacgcggggttgcagcttctgggtttcatcctggcttcgctgggatggatcggctctatcgtcagcactgccctgccccaatggaagatttactcctatgctggggacaacatcgtgactgctcaggccatctacgagggactgtggatgtcctgcgtttcgcaaagcaccgggcagatacagtgcaaagtcttcgactccttgctgaatctgaatagtactttgcaggcaaccagagccttgatggtaattggcatcctgctggggctgatcgcaatctttgtgtccaccattggcatgaagtgcatgaggtgcttagaagatgatgaagtgcaaaagatgtggatggctgtcatcgggggcataatatttgtaatttcaggtctggcgacattagtggccacagcatggtatggaaatagaattgttcaagaattctatgaccccatgacccctgtcaatgccaggtatgaatttggccaggctctctttactggctgggctgctgcctccctctgcctcctgggaggtgccctactttcctgctcctgtccccggaaaacaacctcttacccaacaccacggccttatcccaagccaacaccttctagtgggaaagactacgtgtgacagcggcgaaggaagagatcctcctggagcgaatacaaaatggacattgagactagcattgacattaaggcctcaaactgttgactatggttatctaaactgtggtagaacaaaagcaagcatatttttatacgtccccatggctatgagggtcttggctgtgccttaccatctttcctgagtacaggagggaagccttttgcctttgaactgctgcttgccactgagtgatgacactcaaatgggcgaagggtgctccttaagtgtgtatagatatgtacatatacatattttctattaaaaatagacagctagcaatctcttattctccccatattgtaccagcatactttaaatgactataaaatatatacaattccacattgattaaataagctttctggtgtatttttcttttctctatgaacataagtgatcagtcaaatattaccccttcgatcagcatttagtatctttgccataagaccagacttccttacgaactcagactatgttcttttttttttttccattatgtcttctttacatcaaaatatttgttctccatgttttcttttactctaacagctgctttttcagattgttattctgaggcttgattctaactcctgaatctaataatgaactttgagcccatatgttaaaacttaaaaccagtaagaatctcatactgtgtttctgagctgtgggggccaatgttccagagagatgatgtttctccactgacctttcccacacggtccctgcactttggtctgcagctggcttgtttgctttaaaaatatttgtttccctgagtggctaagctgctaaccctgtggttgaaacagttttattgactgcatttttcaggtactaattttccattccagatcctgcaaactgcagctctcctcttccctcctcagctatcttgttttcccacgtataattatcctacagtttagttctttgcagataggtgtggtccatttatctacacaaactgctagacttgccagagtgataatctagtgacaaatattctctctgtagccgtggacaatttacaatccttatacctcgttttcccatctgtcaaattgggataattacacttaaacagctggtagaggtaatgcgagtattaattagttgatatgactctcattctttgaacatgaaatatgcctaagtagtgtttttccttgctcaattagcagttctgaagtcactgaataaaatctacacacatgcctccaatgccgttctgtatctctctttgtcatgagttcatttcctcccatctagctgtgcatggcctgtcattggtgctgtttcattttgatcattctcatctgtagcaaaggcccttcagcagagcaaggtgttgtaatacaaagggtgttgccattgccatgggtagacctggatttgcatcttggtgctatcacttaattactgaggttgggcagaggccctcgattgccctaaatgtattgctccatctagacaacgggttcattaacttctgccatgcctatgtcgcatgagtcaagagggacgcaggcaaacatggttttatgttggaaaacaacatgtcactctataaattaaggaatttaagttaatgggttttgtctttatttttcaaacaataggaaagagaaacatgttaaatagtttctttccttaagaactctcaaatgaggagttccaaagcttactaagttaaactgatcttaagtctttaaggctttcggttgtgagtcagtgtttcagcctatggtccacgctggccaagaactcctgtgccacacaaacatccttctgcctcagcctcacaactgttatgatgacaggaatgagccccatcccactgttacaccctagtttcagaagtttggcctggtacttctattgctaagcaaatgcaatggcggaaagtgacagtgtatggatactctaaaagcataaagcgtgctctttgtgaagtgatactttcaaagtctaatggaagctggcagttctaggagaggttaagaattataacttatggtaaaaccacatggatgaagttatagaaagaatgaagtcttatgtgaatttgtactatgtaagtttgactgtatttagatgtgtaaagtaatcatgcaaagatcttttgccacaattactgtgcctaatgtgtaatgtaaacacatagaaataacacttgctaaactacacaaaattctatattccaaaataatcccatagaagtcttatgtcagaacttacctagatttgatatttttataccctaataccaaacctggaaacagatcaattgatatttgggggctgaggtgggaatttgtataagtactactctttttcaataaattgttggttttttttaattaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]