2025-07-03 11:25:54, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NM_013601 2162 bp mRNA linear ROD 19-NOV-2024 DEFINITION Mus musculus msh homeobox 2 (Msx2), mRNA. ACCESSION NM_013601 VERSION NM_013601.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2162) AUTHORS Gupta,I., Yeung,J., Rahimi-Balaei,M., Wu,S.R. and Goldowitz,D. TITLE Msx genes delineate a novel molecular map of the developing cerebellar neuroepithelium JOURNAL Front Mol Neurosci 17, 1356544 (2024) PUBMED 38742226 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2162) AUTHORS Padmanabhan,A., de Soysa,T.Y., Pelonero,A., Sapp,V., Shah,P.P., Wang,Q., Li,L., Lee,C.Y., Sadagopan,N., Nishino,T., Ye,L., Yang,R., Karnay,A., Poleshko,A., Bolar,N., Linares-Saldana,R., Ranade,S.S., Alexanian,M., Morton,S.U., Jain,M., Haldar,S.M., Srivastava,D. and Jain,R. TITLE A genome-wide CRISPR screen identifies BRD4 as a regulator of cardiomyocyte differentiation JOURNAL Nat Cardiovasc Res 3 (3), 317-331 (2024) PUBMED 39196112 REFERENCE 3 (bases 1 to 2162) AUTHORS Quilez,S., Dumontier,E., Baim,C., Kam,J. and Cloutier,J.F. TITLE Loss of Neogenin alters branchial arch development and leads to craniofacial skeletal defects JOURNAL Front Cell Dev Biol 12, 1256465 (2024) PUBMED 38404688 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 2162) AUTHORS Haller,M., Yin,Y., Haller,G., Li,T., Li,Q., Lamb,L.E. and Ma,L. TITLE Streamlined identification of clinically and functionally relevant genetic regulators of lower-tract urogenital development JOURNAL Proc Natl Acad Sci U S A 121 (6), e2309466121 (2024) PUBMED 38300866 REFERENCE 5 (bases 1 to 2162) AUTHORS Wu,B., Wu,B., Benkaci,S., Shi,L., Lu,P., Park,T., Morrow,B.E., Wang,Y. and Zhou,B. TITLE Crk and Crkl Are Required in the Endocardial Lineage for Heart Valve Development JOURNAL J Am Heart Assoc 12 (18), e029683 (2023) PUBMED 37702066 REFERENCE 6 (bases 1 to 2162) AUTHORS Scott,M.P. TITLE Vertebrate homeobox gene nomenclature JOURNAL Cell 71 (4), 551-553 (1992) PUBMED 1358459 REFERENCE 7 (bases 1 to 2162) AUTHORS MacKenzie,A., Ferguson,M.W. and Sharpe,P.T. TITLE Expression patterns of the homeobox gene, Hox-8, in the mouse embryo suggest a role in specifying tooth initiation and shape JOURNAL Development 115 (2), 403-420 (1992) PUBMED 1358591 REFERENCE 8 (bases 1 to 2162) AUTHORS Davidson,D.R., Crawley,A., Hill,R.E. and Tickle,C. TITLE Position-dependent expression of two related homeobox genes in developing vertebrate limbs JOURNAL Nature 352 (6334), 429-431 (1991) PUBMED 1677742 REFERENCE 9 (bases 1 to 2162) AUTHORS Monaghan,A.P., Davidson,D.R., Sime,C., Graham,E., Baldock,R., Bhattacharya,S.S. and Hill,R.E. TITLE The Msh-like homeobox genes define domains in the developing vertebrate eye JOURNAL Development 112 (4), 1053-1061 (1991) PUBMED 1682128 REFERENCE 10 (bases 1 to 2162) AUTHORS Holland,P.W. TITLE Cloning and evolutionary analysis of msh-like homeobox genes from mouse, zebrafish and ascidian JOURNAL Gene 98 (2), 253-257 (1991) PUBMED 1673109 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK133846.1 and AV230604.1. On Sep 14, 2006 this sequence version replaced NM_013601.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK133846.1, X59252.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1478 AK133846.1 3-1480 1479-2159 AK133846.1 1482-2162 2160-2162 AV230604.1 160-162 FEATURES Location/Qualifiers source 1..2162 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="13" /map="13 27.84 cM" gene 1..2162 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="msh homeobox 2" /db_xref="GeneID:17702" /db_xref="MGI:MGI:97169" exon 1..449 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /inference="alignment:Splign:2.1.0" misc_feature 20..22 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="upstream in-frame stop codon" CDS 71..874 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="homeobox protein Hox-8-1; homeo box, msh-like 2; homeobox, msh-like 2" /codon_start=1 /product="homeobox protein MSX-2" /protein_id="NP_038629.2" /db_xref="CCDS:CCDS26522.1" /db_xref="GeneID:17702" /db_xref="MGI:MGI:97169" /translation="
MASPTKGGDLFSSDEEGPAVLAGPGPGPGGAEGSAEERRVKVSSLPFSVEALMSDKKPPKESPAVPPDCASAGAVLRPLLLPGHGVRDAHSPGPLVKPFETASVKSENSEDGAPWIQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPFPINSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS"
misc_feature 71..196 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="propagated from UniProtKB/Swiss-Prot (Q03358.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 380..466 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="propagated from UniProtKB/Swiss-Prot (Q03358.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 497..667 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" exon 450..2162 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /inference="alignment:Splign:2.1.0" regulatory 1130..1135 /regulatory_class="polyA_signal_sequence" /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="hexamer: AATAAA" polyA_site 1157 /gene="Msx2" /gene_synonym="Hox-8; Hox8; Hox8.1" /note="major polyA site" ORIGIN
aaaagttggagtcttcgcttgagagttgccagcggagtcgcgcgccgacagctacgcggcgcagaaagtcatggcttctccgactaaaggcggtgacttgttttcgtcggatgaggagggccccgcggtactggccggcccgggtcccgggcctggaggagccgagggcagcgcagaggaacgcagggtcaaggtctccagcctgcccttcagcgtggaggcgctcatgtccgacaagaagccgcccaaggaatcgcccgcggtgccacccgactgcgcctcggctggcgctgtcctgcggccgctgctgctgccgggacacggcgtccgggacgctcacagtcccgggcctctcgtcaagcccttcgagaccgcctcggtcaagtcggaaaattccgaagacggagcaccgtggatacaggagcccggcagatactccccgccgcccagacatatgagccccaccacctgcaccctgaggaaacacaagaccaaccggaagccacgcacacccttcaccacatcccagcttctagccttggagcgcaagttccgccagaaacagtacctgtccatagcagagcgggccgagttctccagctctctgaaccttacagagacccaggtcaaaatctggttccagaaccgaagggctaaggcgaaaagactgcaagaggcggaactggaaaagctgaaaatggctgccaagcctatgctgccctcaggcttcagtctgcccttccctatcaactcacccctgcaagcagcatccatatacggcgcatcctaccccttccatagacctgtgctccccatcccgcctgttggactctatgccacgccggttggatatggcatgtaccatctatcctaaggaagaccagatggaccagactccaggatggatgtttgcataaaagcatccccctccctctccgagaaggtggtgccaactctgctcctgaatgcgagccttgcattgtcaccctaagcgacagggccacttgatacagagtgaatttgttatttaggtgagaggcactaagacctgttttgttttcataattttccaaatgccccctttcctctcacaaatattggctctgctagtttttatgtataaatatataataaaatataagactttttatatgccagatgtaaaaattcaagttattttaaaaggcaaaatttatatatacatttatccattttctttttttttctagatagcatcttcctaagatattgtgttaagtccatttgctacattttcttaaagggaaagagattaattgcagaatttgcaaggatggtggacttgcttatggaaaacatagcagaagtagacacattccatacaggatgtcacttcagacagattcttgcaagtgaagggggaggtgtaacgtgtttatttgcatttctgtgcacaagaaaaagaaatctcttgatgcacatttgatcctattttttttctctttttctccattccatattattaaatctttgttgttgttttaagatcgatgaaaagaggatgagaataactctgagagttactcagggtaaagtagaaaataggaaactccatgtcaggtccctggagtgagagggggttagaaggtgaaatattgtttgtaagaattgatttctatgaaatgctatctacatcagtcctcacacggtacagaggtgattggaagaggacatggtaaatctcttcttaaaaatgagtgtcttataactgtggcctatattttaaatattcttcaacagtccatagaatgaggaaggaaaacatgccttctctctctctctctctctctctctctctctctctctctctctctctagctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactttgtgtgctaaacttcttagggaaatttatatactctaacgtgttgggcagatggagaagccatgtgcttgagttgctggagatggcgttgtcagtcagcacctgggtgtctcaccttcctgtccatctcttcccccagtatatttttatcccgttgaatgggtatcttgtataattttatatattttattgaagagttatttcttatctcttactctgaattaaattaaaatattttattgcagt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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