LOCUS       NM_001427428            5630 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus trophinin (Tro), mRNA.
ACCESSION   NM_001427428 XM_039100392
VERSION     NM_001427428.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5630)
  AUTHORS   Saburi,S., Nadano,D., Akama,T.O., Hirama,K., Yamanouchi,K.,
            Naito,K., Tojo,H., Tachi,C. and Fukuda,M.N.
  TITLE     The trophinin gene encodes a novel group of MAGE proteins,
            magphinins, and regulates cell proliferation during gametogenesis
            in the mouse
  JOURNAL   J Biol Chem 276 (52), 49378-49389 (2001)
   PUBMED   11590179
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jan 23, 2024 this sequence version replaced XM_039100392.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.31327.1,
                                           SRR26643429.58715.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                JAXUCZ010000021.1  23001890-23001944   c
            56-125              JAXUCZ010000021.1  23000431-23000500   c
            126-1265            JAXUCZ010000021.1  22999009-23000148   c
            1266-1370           JAXUCZ010000021.1  22998325-22998429   c
            1371-1434           JAXUCZ010000021.1  22998154-22998217   c
            1435-1514           JAXUCZ010000021.1  22997867-22997946   c
            1515-1606           JAXUCZ010000021.1  22997343-22997434   c
            1607-1686           JAXUCZ010000021.1  22996569-22996648   c
            1687-1729           JAXUCZ010000021.1  22996432-22996474   c
            1730-1792           JAXUCZ010000021.1  22995981-22996043   c
            1793-1907           JAXUCZ010000021.1  22995421-22995535   c
            1908-5419           JAXUCZ010000021.1  22991305-22994816   c
            5420-5630           JAXUCZ010000021.1  22990922-22991132   c
FEATURES             Location/Qualifiers
     source          1..5630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..5630
                     /gene="Tro"
                     /note="trophinin"
                     /db_xref="GeneID:100912141"
                     /db_xref="RGD:6488256"
     exon            1..55
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            56..125
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    66..68
                     /gene="Tro"
                     /note="upstream in-frame stop codon"
     CDS             81..5408
                     /gene="Tro"
                     /codon_start=1
                     /product="trophinin"
                     /protein_id="NP_001414357.1"
                     /db_xref="GeneID:100912141"
                     /db_xref="RGD:6488256"
                     /translation="

MDRRNDYGYRVPTFQGPLPPPGSLGLPFSPDAQTENTEKDNALLMHTLLSATKDPPIASRPKKNKTKKTSIKPIAKTTPTSPPVPPANDNASNKPKVTLQALNLPMFTQISQASAATEAPSIQASVTAQTKKAKTKRVPPKVSLTASEDVTPQLKSPLQGLNLPVTASTSQSPIANESANSLALAVSKPKKSSKAKKAANKTVPSATEISLASTATHTATTQGQAAKETGSVQATAATVRSKKTSKGKRTTAKTANTDTEYVEASNAIEASSRQIETSAVVLRPKKPKGKKVTNKGSNSAAELSEAPPAIQMVTNHALSVTVRIKRGSRARKAATKTRATEGQAHIADQGGQASQASISALETQVAAAVQALADDYLAHLSLEPTTRTRSKRNRKSKHPNGEERTGNNYRRIPWSRRPPPPRDVAILQEKANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEILERASYALEKMFRVNLKEIDKQSSLYILISTQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMDVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIESRAQENADPATNVNFNQGASTRNSFNDGASISFGGITNPSGGFGGISNPNGGFGGRNGITFGSVPNTSANFSSAASISFGGAPSTSTSFNGGTSISFSGTPSTSATFCNTASISFGGAPSTSTSFSSTASISFGGAPSTSTSFSSTASISFGGAPSTSTSFSSTASISFGGAPSIGSSFSGGSSISFGGAPTTSTSFSGGASISFGGAPCTSASFNGGASCGFGGTLGSTVAGFSGALSTSTSFGSAPTTSTVFSGALSTTTGFGGTLSTSVCFGSSPYSGTGFGGTLSTSISFGGSPSTNTGFGGTLSTSVSFGASSSTSSDFGGTLSTSVSFGGSSGASGTGFGGTLNSSTSFGGGISTSTVFGSAVNSSASFGGAISTGFSGALNSSASFGSAISTSSGFGSALSTSASFGGVLNGSAGFGGAISTSASFGGVLNGSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGTMSTSASFGGALNNNAGFGGAISTSASFGGALNNNAGFGGAISTSASFGGTLNNNAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALSNSPDFGGAFSTSVGFGGTLSTTDFGSTHSNSISFGSAPSTSVSFGGSHSTNLCFGGAPSTSLCFGSASNTNLCFGGSSSTNSCFSGATSANYSEGHSTSAIFSFGNGLSTSAGFGNGLGTSAGFGSSLGTSTGFGGSLGPNASFSGGLGTSPGFSGGLGTSTDFGGGLSHSADFNGGLGTSAGFNGGLNTNTDFGGELGTGAGFGDGLGSSTGFGGGLVTSDGFAGDLGTNTGFSGTLGTGAGFSVSLSTGNGFGSGPNASFDRGLNTIIGFGGDSNTSSGFTGEPNTGSSFSNGPSSIVGFSGGPSTGAGFCSGPSTGGFSGGPSTGPGFGGPSTAGGFGGPSTVAGFGSGLNTNAGFGGGPNTSTGFGGGLSTSAAFGGGPPSTSTGFGGGLSTNAGFGGGPPSTGTGFGGGANGLGSCGFSYG"

     misc_feature    1380..1862
                     /gene="Tro"
                     /note="MAGE homology domain; Region: MAGE; pfam01454"
                     /db_xref="CDD:426270"
     misc_feature    2169..>5324
                     /gene="Tro"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; Region: FhaB; COG3210"
                     /db_xref="CDD:442443"
     exon            126..1265
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1370
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1434
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1514
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1606
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1686
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1729
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1730..1792
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..1907
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            1908..5419
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
     exon            5420..5630
                     /gene="Tro"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agacctgaggagaggcttggagagagcagacgtcctctcggctcacgaggacgaggctcagctattagcctttcagaaagatggatagaagaaatgactatggttatcgggtgcccacattccagggccctctgcctccccctgggagcctagggcttcctttctctccagatgcacagacagagaacacagaaaaggacaacgccctgctgatgcataccctgttgtcagcaactaaggacccaccgattgccagccgacctaagaaaaacaagaccaagaagacttctattaagcctattgctaagaccacacccacctcccctccagtcccacctgccaatgataatgctagcaacaaacctaaagtaactttgcaggctttaaacctaccaatgttcacccagattagccaggcttcagctgctactgaagcacctagtatccaggcttcagttactgctcagaccaagaaagccaagacaaagagagttccccccaaggtatccctaactgccagtgaggatgtcactccacagctcaagtcaccgttacagggcctaaacctgccagttactgcatcgactagccagtctccaattgccaatgagtcagctaattccctggccttagctgtcagcaaacccaagaaatcttctaaggcaaagaaggctgccaataagactgtgcctagtgccactgagatctcactggcttcgactgccacccacacagccactacccaaggccaagctgccaaggagacaggtagtgtccaggctacagcagccactgtccgaagtaagaaaacttccaaaggaaaaagaacaactgctaagactgcaaatactgacactgaatatgtagaggcctcaaatgccattgaggcatctagcagacagattgagacctcagctgtagttctaaggcccaaaaaacccaaggggaagaaggttaccaataaaggctcaaattctgctgctgagctctctgaggctccacctgccattcaaatggtcacaaaccatgccctatcagtcactgtacggatcaagagagggtctagggctcgaaaggctgccactaagactcgggcaactgaaggccaggctcatatcgctgaccaaggaggtcaggcctctcaggccagcataagtgccctggagactcaggttgctgctgctgtccaggccttggcagatgactatctggctcatttgagtttagagcccaccaccagaacccggagcaagaggaaccggaagtctaaacatcccaatggagaagaaagaactgggaataattacaggagaatcccatggagccggaggcctccgccaccccgagatgtggccattttgcaggaaaaggcaaacaagttggtgaaatacctgttggttaaagaccagacaaagattccaatcaaacgctcagacatgctgaaggacgtcatccaagaatatgatgagtatttcccagaaatccttgaacgagcaagttatgctctggagaagatgtttcgagtcaatctgaaggaaattgataagcaaagtagcttgtatattcttatcagcactcaggagtcctctgcaggcatcctgggaacgaccaaggacacacctaagttgggtctcctcatggtgattctgagtgtcattttcatgaatggcaacaaggccagtgaggctgtcatctgggaggtgctgcgcaagttggggctgcgccctggggtaagacattcactctttggagaagtgagaaaactcatcacagatgaatttgtgaagcagaaatatctggaatacaagagggtccccaacagcagaccacctgagtatgaattcttctggggcctacgctcttaccatgagactagcaagatgaaagtcctgaaatttgcatgcaaggtacagaagaaagatcccaaagactgggctgctcagtaccgcgaggcagttgagatggacgttcaggctgcagctgtggctgtggctgaggctgaggccagggctgaggcaagagcccaaatggggattggagaggaagctgtggctgggccctggaattgggatgacatggatattgactgcctaacaagggaagagttgggtgatgatgcacaggcctggagcagattttcctttgaaattgaatccagagcccaagaaaatgcagatcccgccactaatgtcaacttcaaccagggagctagtaccagaaatagcttcaatgatggtgctagtattagctttggtggtataactaatcccagtggtggctttggtggcatatccaaccccaatggtggctttgggggcagaaatggcattacttttgggagtgtacccaacacctctgccaacttcagcagtgcagcgagcattagctttggtggtgcgcccagcactagcaccagtttcaatggcggaaccagcattagcttcagtggcacacccagtactagtgccactttctgtaacacagcgagcattagctttggcggtgcaccgagcactagcaccagctttagcagcacagccagcattagctttggcggtgcaccgagcaccagtaccagcttcagcagcacagctagcattagctttggtggtgcaccaagcaccagcaccagcttcagcagcacagccagcattagctttggtggggcacccagcattggtagtagtttcagtggtggatccagcattagctttggcggcgctcctaccaccagtaccagtttcagtggtggagccagtattagctttggcggtgcaccttgtaccagtgccagtttcaatggtggagccagctgtggctttggaggcacactcggcagtactgtagctggctttagtggtgcactcagcacaagcaccagcttcggcagtgcaccaactacaagcactgtcttcagtggtgcacttagcaccaccactggctttggaggcacacttagcaccagcgtctgctttggtagttctccctactctggcactggctttggaggcacgctcagtaccagtatctcctttggtggttctcctagcaccaatactggttttggtggtacactcagcaccagtgtgtcctttggtgcctcttctagcaccagctctgactttggtggcacactaagcactagtgtaagctttggtggctcttctggtgccagtggtactggctttggtggtacactcaacagcagtaccagctttggcggtggcatcagcaccagcactgtctttggcagtgcagtcaacagcagtgccagctttggtggtgccataagtactggctttagtggtgcactcaacagcagtgccagctttggtagtgccatcagcaccagttctggctttggcagtgcactaagcaccagtgccagctttggtggtgtactcaatggcagtgctggctttggcggtgccatcagcaccagtgccagctttggtggtgtactcaatggcagtgctggttttggcggtgccatcagcaccagtgccagctttggtggcgcactgaataacagtgctggctttggcggtgccatcagcaccagtgccagcttcggtggcgcactgaataacagtgctggctttggcggtgccatcagcaccagtgccagctttggtggcgcactgaataacagtgctggctttggtggtgccatcagcaccagtgccagctttggtggcgcactgaataacagtgctggctttggcggcaccatgagcaccagtgccagctttggtggcgcactgaataacaatgctggctttggcggtgccatcagcaccagtgccagctttggtggcgcactgaataacaatgctggctttggcggtgccatcagtacaagtgccagctttggtggcacactgaataacaatgctggctttggcggtgccatcagtacgagtgccagctttggtggtgcactgaataacagtgctggctttggtggagcaattagtaccagtgccagctttggtggtgcactgaataacagtgctggctttggcggtgccatcagtacgagtgccagctttggtggtgcactgaataacagtgctggctttggtggagcaattagtaccagtgccagctttggtggtgcactcagcaatagccctgactttggtggtgcgttcagtaccagtgttggctttggtggcacacttagtaccactgacttcggtagtacccacagcaacagcattagctttggcagtgctcccagtaccagtgttagctttggtggctctcatagcactaacctctgttttggtggagcacccagcaccagtctctgttttggcagtgcatctaacaccaacctatgctttggaggctcttccagcaccaactcctgctttagtggtgctaccagtgccaattacagtgaggggcacagcaccagtgccattttcagttttgggaatgggctaagtaccagtgctggctttggaaatgggttgggcaccagtgctggctttggcagcagcctaggtaccagcactggctttggtggaagcttaggccccaatgctagcttcagtggtggcctgggcaccagccctggctttagcggtggactaggcaccagcacagatttcggtggcggactaagtcatagtgctgacttcaatggaggactgggtaccagtgctggcttcaatggtggactaaacactaacactgattttggtggtgaactgggcactggcgctggctttggtgatggactgggcagcagcaccggctttggtggtggactggtcactagtgatggctttgctggtgacctgggtaccaatactggtttcagtggcacacttggcactggtgcaggctttagtgtaagccttagcactggcaatggctttggcagtgggcctaatgccagcttcgacagaggactgaataccatcattggctttggcggtgattccaacaccagtagtggctttactggtgaacccaacaccggctccagctttagtaatggacccagttctattgttggctttagtggtggaccaagcactggtgctggcttctgcagtggaccaagcactggtggcttcagtggtggaccaagtacaggacctggctttggtggaccaagcactgcaggtggctttggaggaccaagcactgtagctggctttggtagtggactgaacaccaatgctggattcggcggtggaccaaacaccagcactggctttggtggtggactgagcaccagtgctgcattcggcggtggaccaccaagcaccagcactggctttggtggtggactgagcaccaatgctggattcggcggtggaccaccaagcaccggtactggctttggtggtggagccaatggcctgggttcctgtggcttctcttacggctagtaaagtttcaggcttgttccccgtttacggataacgctaaccgcagcagtacttcctacggagccaatgtgcggctttggaattgttgtccacacagcagcctaagcactattacccatcagctgagtgaaacactgaaaaatctgctgttcctgctttgtgttgcttcctgtgttgttgtcctattttggtatcagagttacattaaatttgccaaaggaa

//