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Previous release (v1)
2026-09-15 14:33:10, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS NM_001340215 2142 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family
protein (AT3G63450), mRNA.
ACCESSION NM_001340215
VERSION NM_001340215.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2142)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 2142)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2142)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2142)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
FEATURES Location/Qualifiers
source 1..2142
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..2142
/locus_tag="AT3G63450"
/db_xref="Araport:AT3G63450"
/db_xref="GeneID:825520"
/db_xref="TAIR:AT3G63450"
CDS 368..1588
/locus_tag="AT3G63450"
/codon_start=1
/product="RNA-binding (RRM/RBD/RNP motifs) family protein"
/protein_id="NP_001327792.1"
/db_xref="GeneID:825520"
/db_xref="Araport:AT3G63450"
/db_xref="TAIR:AT3G63450"
/translation="
MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLEERLSFLTPRTAEDFESDLGFGWGHRKEVLRSNSVPPRLANQFTGYPFSPKGVNLQQSEAQRAAALMMGDDLHKLGIWRPERIDLSATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEKGKVPDKYRTKPSRDIMDFQLGGRAFHEDLLWKRRFEERALELQSTRLMNLQLLDVEKQFQLNFDQTLLVSPRLVSNNQRVCTKENDEDTIKLPESLEDDRLVDSPIVSPKHHFLECGVAAETKGSGLSSPSFDQDESSTGTLKEPLKSLKCQMPRLSMMGITQGSSGPTTCRVGI"
misc_feature 836..1045
/locus_tag="AT3G63450"
/note="RNA recognition motif (RRM) found in Arabidopsis
thaliana zinc finger CCCH domain-containing protein 46
(AtC3H46) and similar proteins; Region: RRM_AtC3H46_like;
cd12458"
/db_xref="CDD:409891"
ORIGIN
agttggagcccagaagacacaacagtcactccactcttctttaactcttttttttatttaatttccccacaccacacgactcacgagggaagtggcaactttgatttttgcaagcagaggaggaagaagaagaagtagaaagaagcttaggtatggagtggagtggtacactggtactagagtgatgatggtggtaaggtagttgagaaagaaagcctttttagctttgctaaagtccaagacaagaaaccaaacatctttttgtacacaagacaagacaacaatagcagtgtttctttttcctgccaaagaaagattaagcgagagagagagagacaaggtctcatcgagcaaagagtgtgtttccatggatgtgtacgaagcaactaggatcgtgctctctagaatccagaacttagacccagctaatgcttccaagatcataggtcttctcctccttcaggatcacggtgagaaggagatgataaggttagctttcgggcctcagaatctccttcattctgtcatagccaaggccaaaaaggacctcgaagagcggctttctttcttgactccgagaaccgccgaagattttgagtccgatttagggttcggatggggtcaccgcaaagaggtgcttaggtccaactctgttccgccgagacttgccaatcagttcaccggttatccattctcccccaaaggtgtcaacttgcaacagagtgaagcccaaagagctgctgctttgatgatgggcgatgacttgcacaaattgggaatatggaggccagagaggatcgacctctcggccacggcctgcccggcgtctagacagatctatctgactttcccggctgacagtatcttcagggaagaagatgtttccgactacttcagtacgtttgggccagttcaggacgtgaggataccttaccagcagaagaggatgtttgggttcgtgaccttcatgtacccagagactgtgaagagcattctggccaaagggaaccctcactttgtgtgtcattccagggttcttgttaagccttacaaggagaaaggcaaagtcccagacaagtacaggactaagccatccagggacattatggatttccagcttggggggagggcttttcatgaagatctgctgtggaaaaggaggtttgaagaacgagctcttgagctgcagagcacaaggctgatgaatctgcagcttctcgacgtcgagaaacagtttcaactcaatttcgaccaaacactacttgtttctccacgactagtttcaaacaatcagagagtgtgcacaaaagagaatgatgaggatacaatcaaacttccagagagcttggaggatgataggctggtggatagcccaattgtatcaccgaaacaccattttctcgagtgtggggtagctgcagaaacaaagggttcaggcttgtcgtcgccatcttttgatcaggatgagtctagtacaggtacattgaaagagcctctcaagtccttgaagtgccaaatgccgaggttatcaatgatggggataacacagggcagcagcggaccaacaacgtgtcgcgttgggatctaaacccattcaaaacagctaaccagtggtagtcatttggcatgtcattgcaggaagagaagattaaccaaaaaaaaggaaaaaaggtgaagagcaattagggagacgtggatgtaagatagatagagaagaagatggggggaaggttggttgttgtaccattcattaaacaagagtgttagtaaatgagtcccgtgaatgttatgcaatggaccactccccacaggtgaccttaatattaattaatcatatataaaaaaagcacaagaagagattgattattcaccagaaaaagaaaggttggtttgtctatttttttgtttgtattcaatcactatatatttatctaagttaagttgtaaatactttgagggaacatcatatctattacctcaagagtctagtagttaattgttacaagatagcgaaattttcacttgtgaagatcattaatagctataattgaaagccatcatttgcttgctttgtccataggagtaagtaacaaagaaaagttaacggcttggaatctttagtagttagtgtctgtcgttttg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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