LOCUS       NM_001329291            1338 bp    mRNA    linear   VRT 09-SEP-2021
DEFINITION  Ictalurus punctatus claudin 30 (cldn30), mRNA.
ACCESSION   NM_001329291 XM_017491992
VERSION     NM_001329291.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1338)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            KM870806.1.
            
            On Jul 8, 2016 this sequence version replaced XM_017491992.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: KM870806.1, GEHJ01101964.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="18"
                     /map="18"
     gene            1..1338
                     /gene="cldn30"
                     /gene_synonym="CLDN30d; zgc:136892"
                     /note="claudin 30"
                     /db_xref="GeneID:108278543"
     exon            1..1338
                     /gene="cldn30"
                     /gene_synonym="CLDN30d; zgc:136892"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    134..136
                     /gene="cldn30"
                     /gene_synonym="CLDN30d; zgc:136892"
                     /note="upstream in-frame stop codon"
     CDS             206..1135
                     /gene="cldn30"
                     /gene_synonym="CLDN30d; zgc:136892"
                     /note="claudin 30d"
                     /codon_start=1
                     /product="uncharacterized protein LOC678612 homolog"
                     /protein_id="NP_001316220.1"
                     /db_xref="GeneID:108278543"
                     /translation="

MASQGIHLLGSILALLGWVGVLLSCIIPMWRVTSFMGATIVTSEIIWEGIWMNCVVQSTGQMQCDPYDSMLVLNSDLKAAQVLTVASLLTGSLGIILAFIGGKYTRFLDYSSGAAKDRVATAAGVTLIISALLCLIPVTWAAVAVIQIFYNPQIIDAQRREIGAAIYIGWGASILLLLGGGMLCSTSCSQKAEDDSPLVNYRFVRSSGAGSSIRSSRHIRLHSPSQNRKILVRSDGASVNHQQQQQHKTTSEGSKKSKTSTTKSEEPMIEPERSDGPSTKSQLNHLGSDHSLGSSESEVASSCPEKTYI"

     misc_feature    218..727
                     /gene="cldn30"
                     /gene_synonym="CLDN30d; zgc:136892"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      

actcatgtgcatactttgctggtaaccggaaagttgtctgagagagagtttctgagtgacaggaaagtcagagaaatagtgaagtagaaaaagaattgctataaaaacgaggatttaaaatcaagtttttagttagctgtattttcaaacagaagataaaacaaagtgcagatcatttagtttgaatccagtgatccagagagaaatggcttcacaggggatacatttgttgggcagtattcttgccctgcttggctgggtgggcgtccttctctcctgcatcataccaatgtggcgcgtgactagcttcatgggtgcaaccattgttacctctgagatcatatgggaaggcatctggatgaactgtgtggtacaaagtacaggtcagatgcaatgtgacccttatgactccatgctggttctcaactctgatctgaaggcagctcaggtgctcaccgtagcatcgcttctgactggctcactgggaattatactggccttcatcggaggaaaatatactcgctttctggactacagtagtggagctgcaaaagatagagttgccactgctgctggcgtgacactgatcattagtgccctgctctgtctgattcctgtcacatgggctgcggttgctgtgatccagatcttttacaacccacagataattgacgcccagcgcagagagattggtgcagctatctacattggctggggcgcatccatccttctcttactgggtggtggtatgctctgtagcacatcctgttcgcagaaggcagaagatgacagtcctttagtcaactacaggtttgtacgttcatctggagctggatctagcatcagaagttcacggcacatccggctccacagcccaagccagaatagaaagatactggtgaggtctgatggtgcttcagtcaatcatcagcagcagcaacagcacaaaacaacctctgaaggatccaagaagagcaagacatcgactacaaaatcggaagagcccatgatcgagcctgagcgaagtgatgggccgtctacaaagtcccagctgaatcacctaggctctgaccacagcctgggctcttctgaaagtgaagtcgcttcctcatgtcctgagaagacctacatctgatctggaaagtccccacaacagcatcatatgatgcatcacatacatattcagaatcaaaaaaggattttaatgaaggaataatcacaaaattggacattctgataaagcatagtgtattgatttgtaccatagatgatgcttcaaaagtcttcactggtacctcagggtgtactgatttatcttgttatagatagatagataga

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