GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2019-03-22 05:25:06, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001307220           25584 bp    mRNA    linear   INV 15-AUG-2018
DEFINITION  Caenorhabditis elegans CLArinet, functional homolog of cytomatrix
            at the active zone proteins piccolo and fife (cla-1), partial mRNA.
ACCESSION   NM_001307220
VERSION     NM_001307220.2
DBLINK      BioProject: PRJNA158
            BioSample: SAMEA3138177
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.
REFERENCE   1  (bases 1 to 25584)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 25584)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 25584)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2018) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 25584)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003282).
            On Aug 25, 2015 this sequence version replaced NM_001307220.1.
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..25584
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="IV"
     gene            <1..>25584
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /db_xref="GeneID:177539"
                     /db_xref="WormBase:WBGene00018468"
     CDS             1..25584
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="F45E4.3b"
                     /artificial_location="low-quality sequence region"
                     /note="Partially confirmed by transcript evidence;
                     Product from WormBase gene class cla"
                     /codon_start=1
                     /product="CLArinet, functional homolog of cytomatrix at
                     the active zone proteins piccolo and fife"
                     /protein_id="NP_001294149.2"
                     /db_xref="EnsemblGenomes-Gn:WBGene00018468"
                     /db_xref="EnsemblGenomes-Tr:F45E4.3b"
                     /db_xref="GeneID:177539"
                     /db_xref="GOA:W6SB91"
                     /db_xref="UniProtKB/TrEMBL:W6SB91"
                     /db_xref="WormBase:WBGene00018468"
                     /translation="
MSSWFSYFGFSKGPPLEEVREESEEDAQVPEQVVSKNTEEEIADAINRLSPEQQNLIQDVLRRAESSRKEAKVVVDAEMMRSRFRQRDSIEDSQEIDHRYSLIQMDSIPENMVTNEMEERLATTQNEDIIPESSQRSPITPRKIHEKRASITEVTTENLRHRFQKMKSHLTTWFNSLDYDGEYIFDFTSKPEKSEKLGELTMQYIDALSQAIMISSHIEYSHHVLSSNPKFQQMCTQFCESIFSVAFDELTYQLLDDKVQETLNEYCGQIAEEALQAAFFTMISKTLSKSKECEQVLNEISSMHKSRSFESAKQLDQLLSRIEDDRESSRKSSPYLYEVLGKSSDSPSTSASVEYRSQNSYESEISFETPDIHVEELFDTHLNEKDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIWISGPLGRINEEHEDDFEARSESSSGSMITHSTEPKMQLNVEEYIQTMIARVSTENEITNTSNQTANIVIDPGSIDSEEINKLAAKLVEESILKASQEAASDNHEKERSSATSKADYERSFDQDVTYERSSPLLEPSEEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPARLPTVDEPIVISEQHEEDRSSATSGADYERSFDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIARIQSLAEKSSFEQASTIPDRPPLPARLPTVDEPIVISEQHEEDRSSATSGADYERSFDQDVTYEKSSPLLEPSEDPVMESKEPELTQEEIDHIARIQSLAEKSSFEQTSTIPDRPPLPARLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDNIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQQEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSSAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDATYERSSPLLEPCEEPVMESRVPELTQEEIDHIARIQSLAEKSSFEQTSTIPDRPPLPARLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGDDYERPFDQDFTYERSSPLLEPCEEPVMESRVPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVQLPTVDEPIVSSEQQEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASKIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEEPVMESRVPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEEDRSSATSGADYERSFDQDVTYERSSPLLIPSEDPVMESKESELTQEEIDHIARIQSLAEQSLFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVMYERSSPLLIPSEDPVMESKESELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQNLAEQSSFEQASTITDRPPLPVRLPTVDEPIVISEQHEGDRSSATPGADYERSYDQDVTYERSSPLLEPSEVPVMVSKAAVLTQEEIDHIAIMQSLAETEDRKALLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSIDQEVTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYDRSSPLLEPCEEPVMESKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGTDYERSFDQDVTYERSSPLLEPCEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERPFDQDFTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPYEEPVMESKVPELTQEEIDHIARIQSLAEQSSFEQAPTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLIPSEDPGNPSEPAPTPEEIHHTACDPSIAAPSSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGTDYERSFDQDVTYERSSPLLEPSEEPVMLSKEAELTQEEIDHIAIIQSLAEKSSFEQFGIQTGHPFLPVRILTERQNDHDRISEEDNTSSCSSENNIILKYSDISYDRNTPLLNSDDEFLEKDFGASAESSEPSQGNWAKFEEISSSSNAEWPTNISTYKFPSFSEKNVNEDLLNKSSWDCRDNVIVDDVIEEEDENDLLGDVTYSREVNKDYWKDSSTIPLVRIECVSDEQINVNEETPGIDKEIKSAEISKDDNSVVSCSSENQIDHTNDEHFDFGQEDSEHEELKHCSSQYSFDSSLPPFHRYVACPSITPSEGDDGGSSETGHPTTDECYNEDVNRQIEQYSALASLSKSVLPVVEIKIDEATSESSVLQLDDDDKSISEQEDFIDNMDLTLKRNEDKTNITNLGASEIQQQEENEISAQTAEVESSDSWNSKTVKMLSDDSAFAEETQHVDLVSTSATKHEDYAEEQTLSQEEIDHIARITAMATEDNTDLQTLPTPQVRQNEPELSQKEIDHITRIAAMANKDFGMYPSIVSEHPAPVESELTQEELDHIARITEIASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHIARIAEMADMDYNTPFTAEPVQDEEEEPITESGSDATSGADIFDEQEDASSDREKRSGTSFPDNAETSLEDDTAHEKSYPQLEPSEEPVMKSKEPELTQEEIDHFARIQSLAEQSSFEQASTIPDRQPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQTSTIPDRQPLPVRHPTVDEPIVISGQHEEDRSSATSGADYQQSFDQDDPSKRSSPLLEPNEEQMMESTQPELTQDHSSTTISDILIKEVDKFIPEAKFGRSFEEHDGRLIHSGNLDIDVPLESDCRKTFGQDKSESTMPTELTEADLERVARIHQHFDQSSFDEVVVPTSHPDDGRSSSVRSSEYLDTVTPLSSCAATPILTNPKLVQEELDHIAFIQKMAEQFTFDEVETPILRQNTTSHSVSYNFVQRSCHEDVSFQKKESPALTSLKEIAESSQLTQEELDHIASIQQMADQPYFEESHFIFKSDVKEEKKEDKLHHELFVEECVAQESITQDDVERKPLELTQEEIDHIAKIQKLADQSSFEQASAIQSLPTAEEPIVEKREDDKSNITSGADYQQSFDQDVTYKRSSPLLEPSEEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDISSATSGADYERSLDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADIERSFDIDVSQDRVSPISEHEEGVTQEEMEHIARIAAMAAEDFKHPEGNLEPEFSQPDKDHIAMMKKLEEQSKMENQELPANPIIHTDQVDRQESEGSSSATSGADIPSSFDISSPIPPEPLQDHITTSQKLISRPSIEISNVPSRLPELSLTAVQRGSEDISSATSGAGIERSFDGISPLPNFSEEPIMINDEMNYVLMVTHMAQKIDVQQPIQETSTLRKAVLCESPEDFSEATSGADTESISETTANKKDSNDSNGLTEEEMKHIAEVLRKAEASSAASGMFERDSNLPPLRRTSITYTSHFSPSVIRDLRSSTSFTSVPAASDEEEIVKGKLKREPSTQVVYTDHFLRDLQSINAYLEKGEDGTDVTIEETSHDNESSSLPEEDEHITDVYHFDVGTSLLVQQYILQQSTFQEAAGLHISPIRRTMSAACTAEKHIDDEENIKEREVKHAQSHDQIKKRAGGEPNAYELLEQHSFRHTQPLLCNVDFLWRLNFAANRMTEEIADEAGRELRAHYRNVANPRARYFSDAYDIGTDDEEEEVTETSQAGFSVEPMRHEEQSYGLFSFFTSSKRSVSDRPRSALAMFTNPSPSASPSLLRKESEDRGDILNLLRRSSGADSRASNDSSASRLPDTALVGLSEAEKQHIMSVMSRSNRNTSPMTSRRCSSALQMLPEVDNLSEAEKEHIQTILEKAESKTPFMIKVPMKKQISSRTESTNSRVSSEGIDEEVENEVQRKKTIEEPIVEIPSRAVTPRNNLRVIPPPIAISHPTPPHSAKTDTGSRHSSGSSAHSQFGFSTPSISGFKIFFDKAKTATETLVKEIKDEVIVEVDKDKTETKPEPNVSNELTAEEFEHIRRINEMAGIDEPIQPPPIAQERRKSSVVSGLKNMFGVGKHDESELTTEEKEHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQNQSKQSLSGLTQEELDNIAQATESAQQESKQELTQDEIDHIARINAMAAEDFEQPAVNMNQGLSQAEKDHIARIEAMAADDSQSKIIVPPPSIIQKDIELSMEEMDHIARIAAMADEDFTHPVKGAVAPIYDENYSRDDGAIDRFPASTATPVFAQPSEIELSEEEREHISRIAAMAEEDFNTPYVSTHPTQQIEIELTEEEKEHIARIEAMASEDLNAPSPFIQQEQRVATMPVPINYHVEEPTLSQEEIDHIARITAMATEDNTDLQTLPTPQVKQNEPELSQEEIDHITRIAAMANEDFGMYPSIVSEHPAPVESELTQEELDHIAKITGMASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHIARIAEMADMDYNTPFTAEPVQDEEEEPITESGSDATSGADIFDEQEDASSGASGSFDNNNAQVLTSGFSPDRVTSPAALDTTEEPQGPIMAQKTVSPTPSADSMASRKSSEYDIRSISEIRQESESDIGKWYEEQLSFMRQSIHDEEEDVGHEIRTDVEEFPLEYVEDQLHFLEGIDVESQHHEPTTSSAFFGTGRSIGEGEKRKYGDDAVEQQKLENYEEEEKTKSSSREAFDDGFETQREESLRAQQTPIDSLPGSRMLKRPNFGFLSNIANDAINKAKEAGSQIQAAVPIKPSSSSSNIVNNNVFSSSKSSTSLGTSAPTKSIPSPQIGIPMDGLSEEERRQIMSVMAAADFDDSVNNVKPSTSGSSNIPAGMEDLSEAEREKIMSVMANAEMEMGARFPPPSSQIPTRSPSVMSSSIMSELPPGLDDLSDDERMKIMAVMAEADMQNVRKPIARGPPPMPPSTSMIPPGMEGLSEEERQKIMSVMANAETDSSSSVITSRQPSRSPSVARMQPQLMPPQQAIPIIPPGLEGLSDEERHTIMSVMAEAEFEESRSQVPSRQPSRSPSFVNPQQSFHPIPSFEPIVPPGLEDLSEEERQKIMSVMMNAEVEESRSQLPSRQPSRSPSVAMIQAPAVPIIPSGMEDLPEAERQKIMSVMAEAEIQNFVPSRSPSNYSMQPVPVIPHGLEDLSEAERQKILSVMAEAEIDSAKIPSRSTSSYSMPPPLPQMSQPEITTGLEHSSEADMEFGRDSSRSHQVIPPGLENLSEEERQQIMSVMAHAELESIIPSGHIDQPISLPRGHTGFKPAGIVNEDELFETERKQREESPTRESGYATSTSYERELAMGDEERMDGLLEDIIRIREGARSRRDSRDEVLHRREEDPEVHTPEESSTAVVTDVPSVSPVTENVPEKQTDDFDFTYSDSRFAEIVQMQEEEEAGSLQKQKVDEKPRMWETVFDGDESELPHQDFVFNEPTTKKTSDFDFPKETDEVFEKPSEIQRIRVTKNHDVDMDEIYDNVIATEAPSSVSQRRQPVDSETSVKSRTIQRGPTKPPPMIKITVEEETKSDSDEESCSEDDEEYPDRVVAAPTAPAPTFEEVENERIRQEELGKEVLQQIMAFGEVANDEFDVQWAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRSKEIEEERIRTEALEEEEFYRHGHNPFLESPEEDEVSINMEDVEYAEIARLYESANQTMRRPGPVYTITEDESEDDGTLSNSESRLVAREKRLMDKKTADSLMAKYQKMKKVQAKQTTTASSTSVTATPAYAIINFSDLKTSTRTTDSNSYFETTKNIPALEIKDPKKDIPPEISASIDKTMAEVDALLGQVYTNEKAIPNLLCFDQSNFSNHPPTSSASTSTADDLILLKNNNSSSPSFLLPLQSSVLGSQLDSVRDDNERNENETTSPRGLKRSPGMLLPSPTSTSIFPMPPTAAESVGAAIGATTASMFGGISVADPPPTMDGLTNSYKWLQNIEDDGNLANNDMGRRKLPSIPPNSSAFPPPTSVTTNVISTDTSMPSTSSGPAPTYVDDYNVTLPSDPIVAESLLKGGSLTRRHQHQQQHQAPVYITSSASRPPSAAGSNIFQESRPTSSLSMYQNDVILSRPGSAASNYTTASTINPTILAGASYSSKASSHIRQPVSVRSPRAQTGTTQTTAASGSASNSIRPSIGSSSVTTRVPNTLARVLLKKELKDVLIQRKQRLEATEIEANQRHYKVQKMLITGLLPEKPEDDIPNIVKCDLPADLVRGVHISMQPPSPAVSAFSPRRYHHPTSVASHQSHPSTFKHMSKSIACQADELPPVKPMISLRTQLDMERRPQLMTYVGKRSAETQTELANYESITPTVRYGSIPRSSRERTASRRYREQQQQIYNQMPQNHNDLLEITKKYFEDYDRQLREFGERARRHSRRRFDFHDDDDQDDMRKNQVMHELARRKERMCASCEILSTTDPIRTALNPNVPMSSDYSSHVPHYGSLPRIDYPRGTRSDVRDFTYRQQHLPQQPPTNYSYNYGSLPRNFERGFSDLPPIEIENEQSFGAPPRHRSNLGYESTSMFNLSDPVYLGYDSIPMVQHQQPRVYDQIPSGYAQDTTNLNSLNQGVRGSDMVSQYASYLNSQFQSGLQQSAQLPQPMIPITRYDAPMSDPYVSSRSRLVDQMNQGYNSNQYHHHSTLLAPKSAQMTHIAPTYNQLAQQQGIPMQNTQMDPLMMSSGRIPSSSSQVYSRNEMNYGSRPAQSSLFEYGNRRQYGAAPPPTYDVPNVSSASDWRTTQQQGLIQQMPMQMQQQQHNTFDARWPKEDALSRMYATASRRRAQGDNSPSFLIDGR"
     STS             11585..12570
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="T23A7.b"
                     /db_xref="UniSTS:322629"
     STS             11585..12288
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="T23A7.b"
                     /db_xref="UniSTS:322629"
     STS             16477..17659
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="F45E4.4"
                     /db_xref="UniSTS:311229"
     STS             23931..24984
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="F45E4.3"
                     /db_xref="UniSTS:306319"
ORIGIN      
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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]