LOCUS       NM_001307219           27002 bp    mRNA    linear   INV 16-MAY-2025
DEFINITION  Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA.
ACCESSION   NM_001307219
VERSION     NM_001307219.4
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 27002)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 27002)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2025) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 27002)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2025) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 27002)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003282).
            
            On May 27, 2020 this sequence version replaced NM_001307219.3.
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..27002
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="IV"
     gene            <1..27002
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /db_xref="GeneID:177539"
                     /db_xref="WormBase:WBGene00018468"
     CDS             1..26769
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /standard_name="F45E4.3a"
                     /artificial_location="low-quality sequence region"
                     /note="Partially confirmed by transcript evidence"
                     /codon_start=1
                     /product="Protein clarinet"
                     /protein_id="NP_001294148.2"
                     /db_xref="GeneID:177539"
                     /db_xref="WormBase:WBGene00018468"
                     /translation="

MSSWFSYFGFSKGPPLEEVREESEEDAQVPEQVVSKNTEEEIADAINRLSPEQQNLIQDVLRRAESSRKEAKVVVDAEMMRSRFRQRDSIEDSQEIDHRYSLIQMDSIPENMVTNEMEERLATTQNEDIIPESSQRSPITPRKIHEKRASITEVTTENLRHRFQKMKSHLTTWFNSLDYDGEYIFDFTSKPEKSEKLGELTMQYIDALSQAIMISSHIEYSHHVLSSNPKFQQMCTQFCESIFSVAFDELTYQLLDDKVQETLNEYCGQIAEEALQAAFFTMISKTLSKSKECEQVLNEISSMHKSRSFESAKQLDQLLSRIEDDRESSRKSSPYLYEVLGKSSDSPSTSASVEYRSQNSYESEISFETPDIHVEELFDTHLNEKDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIWISGPLGRINEEHEDDFEARSESSSGSMITHSTEPKMQLNVEEYIQTMIARVSTENEITNTSNQTANIVIDPGSIDSEEINKLAAKLVEESILKASQEAASDNHEKERSSATSKADYERSFDQDVTYERSSPLLEPSEEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPARLPTVDEPIVISEQHEEDRSSATSGADYERSFDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIARIQSLAEKSSFEQASTIPDRPPLPARLPTVDEPIVISEQHEEDRSSATSGADYERSFDQDVTYEKSSPLLEPSEDPVMESKEPELTQEEIDHIARIQSLAEKSSFEQTSTIPDRPPLPARLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDNIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQQEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSSAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDATYERSSPLLEPCEEPVMESRVPELTQEEIDHIARIQSLAEKSSFEQTSTIPDRPPLPARLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGDDYERPFDQDFTYERSSPLLEPCEEPVMESRVPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVQLPTVDEPIVSSEQQEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASKIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEEPVMESRVPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEEDRSSATSGADYERSFDQDVTYERSSPLLIPSEDPVMESKESELTQEEIDHIARIQSLAEQSLFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVMYERSSPLLIPSEDPVMESKESELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQNLAEQSSFEQASTITDRPPLPVRLPTVDEPIVISEQHEGDRSSATPGADYERSYDQDVTYERSSPLLEPSEVPVMVSKAAVLTQEEIDHIAIMQSLAETEDRKALLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSIDQEVTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSSDQEVTYDRSSPLLEPCEEPVMESKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGTDYERSFDQDVTYERSSPLLEPCEDPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPSEDPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERPFDQDFTYERSSPLLEPCEEPVMESKKPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADYERSFDQDVTYERSSPLLEPYEEPVMESKVPELTQEEIDHIARIQSLAEQSSFEQAPTIPDRPPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLIPSEDPGNPSEPAPTPEEIHHTACDPSIAAPSSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTVPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGADYERSFDQDVTYERSSPLLEPCEEPVMESKEPELTQEEIDHIAWIQSIAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEDDRSSATSGTDYERSFDQDVTYERSSPLLEPSEEPVMLSKEAELTQEEIDHIAIIQSLAEKSSFEQFGIQTGHPFLPVRILTERQNDHDRISEEDNTSSCSSENNIILKYSDISYDRNTPLLNSDDEFLEKDFGASAESSEPSQGNWAKFEEISSSSNAEWPTNISTYKFPSFSEKNVNEDLLNKSSWDCRDNVIVDDVIEEEDENDLLGDVTYSREVNKDYWKDSSTIPLVRIECVSDEQINVNEETPGIDKEIKSAEISKDDNSVVSCSSENQIDHTNDEHFDFGQEDSEHEELKHCSSQYSFDSSLPPFHRYVACPSITPSEGDDGGSSETGHPTTDECYNEDVNRQIEQYSALASLSKSVLPVVEIKIDEATSESSVLQLDDDDKSISEQEDFIDNMDLTLKRNEDKTNITNLGASEIQQQEENEISAQTAEVESSDSWNSKTVKMLSDDSAFAEETQHVDLVSTSATKHEDYAEEQTLSQEEIDHIARITAMATEDNTDLQTLPTPQVRQNEPELSQKEIDHITRIAAMANKDFGMYPSIVSEHPAPVESELTQEELDHIARITEIASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHIARIAEMADMDYNTPFTAEPVQDEEEEPITESGSDATSGADIFDEQEDASSDREKRSGTSFPDNAETSLEDDTAHEKSYPQLEPSEEPVMKSKEPELTQEEIDHFARIQSLAEQSSFEQASTIPDRQPLPVRLPTVDEPIVISEQHEGDRSSATSGADYERSFDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQTSTIPDRQPLPVRHPTVDEPIVISGQHEEDRSSATSGADYQQSFDQDDPSKRSSPLLEPNEEQMMESTQPELTQDHSSTTISDILIKEVDKFIPEAKFGRSFEEHDGRLIHSGNLDIDVPLESDCRKTFGQDKSESTMPTELTEADLERVARIHQHFDQSSFDEVVVPTSHPDDGRSSSVRSSEYLDTVTPLSSCAATPILTNPKLVQEELDHIAFIQKMAEQFTFDEVETPILRQNTTSHSVSYNFVQRSCHEDVSFQKKESPALTSLKEIAESSQLTQEELDHIASIQQMADQPYFEESHFIFKSDVKEEKKEDKLHHELFVEECVAQESITQDDVERKPLELTQEEIDHIAKIQKLADQSSFEQASAIQSLPTAEEPIVEKREDDKSNITSGADYQQSFDQDVTYKRSSPLLEPSEEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVISEQHEGDISSATSGADYERSLDQDVTYERSSPLLEPCDEPVMESKEPELTQEEIDHIARIQSLAEQSSFEQASTIPDRPPLPVRLPTVDEPIVSSEQHEEDRSSATSGADIERSFDIDVSQDRVSPISEHEEGVTQEEMEHIARIAAMAAEDFKHPEGNLEPEFSQPDKDHIAMMKKLEEQSKMENQELPANPIIHTDQVDRQESEGSSSATSGADIPSSFDISSPIPPEPLQDHITTSQKLISRPSIEISNVPSRLPELSLTAVQRGSEDISSATSGAGIERSFDGISPLPNFSEEPIMINDEMNYVLMVTHMAQKIDVQQPIQETSTLRKAVLCESPEDFSEATSGADTESISETTANKKDSNDSNGLTEEEMKHIAEVLRKAEASSAASGMFERDSNLPPLRRTSITYTSHFSPSVIRDLRSSTSFTSVPAASDEEEIVKGKLKREPSTQVVYTDHFLRDLQSINAYLEKGEDGTDVTIEETSHDNESSSLPEEDEHITDVYHFDVGTSLLVQQYILQQSTFQEAAGLHISPIRRTMSAACTAEKHIDDEENIKEREVKHAQSHDQIKKRAGGEPNAYELLEQHSFRHTQPLLCNVDFLWRLNFAANRMTEEIADEAGRELRAHYRNVANPRARYFSDAYDIGTDDEEEEVTETSQAGFSVEPMRHEEQSYGLFSFFTSSKRSVSDRPRSALAMFTNPSPSASPSLLRKESEDRGDILNLLRRSSGADSRASNDSSASRLPDTALVGLSEAEKQHIMSVMSRSNRNTSPMTSRRCSSALQMLPEVDNLSEAEKEHIQTILEKAESKTPFMIKVPMKKQISSRTESTNSRVSSEGIDEEVENEVQRKKTIEEPIVEIPSRAVTPRNNLRVIPPPIAISHPTPPHSAKTDTGSRHSSGSSAHSQFGFSTPSISGFKIFFDKAKTATETLVKEIKDEVIVEVDKDKTETKPEPNVSNELTAEEFEHIRRINEMAGIDEPIQPPPIAQERRKSSVVSGLKNMFGVGKHDESELTTEEKEHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQNQSKQSLSGLTQEELDNIAQATESAQQESKQELTQDEIDHIARINAMAAEDFEQPAVNMNQGLSQAEKDHIARIEAMAADDSQSKIIVPPPSIIQKDIELSMEEMDHIARIAAMADEDFTHPVKGAVAPIYDENYSRDDGAIDRFPASTATPVFAQPSEIELSEEEREHISRIAAMAEEDFNTPYVSTHPTQQIEIELTEEEKEHIARIEAMASEDLNAPSPFIQQEQRVATMPVPINYHVEEPTLSQEEIDHIARITAMATEDNTDLQTLPTPQVKQNEPELSQEEIDHITRIAAMANEDFGMYPSIVSEHPAPVESELTQEELDHIAKITGMASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPATQRSITHKVSLTPPPPPPSKHFEQDLTQEELDHIARIAEMADMDYNTPFTAEPVQDEEEEPITESGSDATSGADIFDEQEDASSGASGSFDNNNAQVLTSGFSPDRVTSPAALDTTEEPQGPIMAQKTVSPTPSADSMASRKSSEYDIRSISEIRQESESDIGKWYEEQLSFMRQSIHDEEEDVGHEIRTDVEEFPLEYVEDQLHFLEGIDVESQHHEPTTSSAFFGTGRSIGEGEKRKYGDDAVEQQKLENYEEEEKTKSSSREAFDDGFETQREESLRAQQTPIDSLPGSRMLKRPNFGFLSNIANDAINKAKEAGSQIQAAVPIKPSSSSSNIVNNNVFSSSKSSTSLGTSAPTKSIPSPQIGIPMDGLSEEERRQIMSVMAAADFDDSVNNVKPSTSGSSNIPAGMEDLSEAEREKIMSVMANAEMEMGARFPPPSSQIPTRSPSVMSSSIMSELPPGLDDLSDDERMKIMAVMAEADMQNVRKPIARGPPPMPPSTSMIPPGMEGLSEEERQKIMSVMANAETDSSSSVITSRQPSRSPSVARMQPQLMPPQQAIPIIPPGLEGLSDEERHTIMSVMAEAEFEESRSQVPSRQPSRSPSFVNPQQSFHPIPSFEPIVPPGLEDLSEEERQKIMSVMMNAEVEESRSQLPSRQPSRSPSVAMIQAPAVPIIPSGMEDLPEAERQKIMSVMAEAEIQNFVPSRSPSNYSMQPVPVIPHGLEDLSEAERQKILSVMAEAEIDSAKIPSRSTSSYSMPPPLPQMSQPEITTGLEHSSEADMEFGRDSSRSHQVIPPGLENLSEEERQQIMSVMAHAELESIIPSGHIDQPISLPRGHTGFKPAGIVNEDELFETERKQREESPTRESGYATSTSYERELAMGDEERMDGLLEDIIRIREGARSRRDSRDEVLHRREEDPEVHTPEESSTAVVTDVPSVSPVTENVPEKQTDDFDFTYSDSRFAEIVQMQEEEEAGSLQKQKVDEKPRMWETVFDGDESELPHQDFVFNEPTTKKTSDFDFPKETDEVFEKPSEIQRIRVTKNHDVDMDEIYDNVIATEAPSSVSQRRQPVDSETSVKSRTIQRGPTKPPPMIKITVEEETKSDSDEESCSEDDEEYPDRVVAAPTAPAPTFEEVENERIRQEELGKEVLQQIMAFGEVANDEFDVQWAKTTTSQTPSTSTKPTVTAPKRSDPIPIAPSQRSKEIEEERIRTEALEEEEFYRHGHNPFLESPEEDEVSINMEDVEYAEIARLYESANQTMRRPGPVYTITEDESEDDGTLSNSESRLVAREKRLMDKKTADSLMAKYQKMKKVQAKQTTTASSTSVTATPAYAIINFSDLKTSTRTTDSNSYFETTKNIPALEIKDPKKDIPPEISASIDKTMAEVDALLGQVYTNEKAIPNLLCFDQSNFSNHPPTSSASTSTADDLILLKNNNSSSPSFLLPLQSSVLGSQLDSVRDDNERNENETTSPRGLKRSPGMLLPSPTSTSIFPMPPTAAESVGAAIGATTASMFGGISVADPPPTMDGLTNSYKWLQNIEDDGNLANNDMGRRKLPSIPPNSSAFPPPTSVTTNVISTDTSMPSTSSGPAPTYVDDYNVTLPSDPIVAESLLKGGSLTRRHQHQQQHQAPVYITSSASRPPSAAGSNIFQESRPTSSLSMYQNDVILSRPGSAASNYTTASTINPTILAGASYSSKASSHIRQPVSVRSPRAQTGTTQTTAASGSASNSIRPSIGSSSVTTRVPNTLARVLLKKELKDVLIQRKQRLEATEIEANQRHYKVQKMLITGLLPEKPEDDIPNIVKCDLPADLVRGVHISMQPPSPAVSAFSPRRYHHPTSVASHQSHPSTFKHMSKSIACQADELPPVKPMISLRTQLDMERRPQLMTYVGKRSAETQTELANYESITPTVRYGSIPRSSRERTASRRYREQQQQIYNQMPQNHNDLLEITKKYFEDYDRQLREFGERARRHSRRRFDFHDDDDQDDMRKNQVMHELARRKERMCASCEILSTTDPIRTALNPNVPMSSDYSSHVPHYGSLPRIDYPRGTRSDVRDFTYRQQHLPQQPPTNYSYNYGSLPRNFERGFSDLPPIEIENEQSFGAPPRHRSNLGYESTSMFNLSDPVYLGYDSIPMVQHQQPRVYDQIPSGYAQDTTNLNSLNQGVRGSDMVSQYASYLNSQFQSGLQQSAQLPQPMIPITRYDAPMSDPYVSSRSRLVDQMNQGYNSNQYHHHSTLLAPKSAQMTHIAPTYNQLAQQQGIPMQNTQMDPLMMSSGRIPSSSSQVYSRNEMNYGSRPAQSSLFEYGNRRQYGAAPPPTYDVPNVSSASDWRTTQQQGLIQQMPMQMQQQQHNTFDARWPKEDALSRMYATASRRRAQETALTSSNKISTGSRSYARRPIRPSSYRNPEATNSMPDRHVARRTAENSRYDVKRILLTRSYKHHNIYNDLGVRVVGGKRQMNGELSAYVSQLHSTANNQTLGQIKIGDEVVEWNGILLRGKTFEEVERIVNKSHGEIEMVIRTYKNPSSGVYDTLPLNRNTMRDDLSPDRVPPVPMHRINGINNNSVLHHHTLSDSSCHGHIQVSLGYDGNSRLVAKIIRARGLKSRDQSRSAPNPFVKVYLLPGRKVSHKRRTRFVDSSCAPEWNQVLEYQVAPHTLNTMFLEFTVCDYQRDVDDLPLGNVQIPLADKSAINTGPRWYPLQGSYDQPIPQHYMNGTSLSQIPSIAAASKHSAAVHNHHNHNYSEVPPSILYPKGGVGTRHPDKPVRHATFNYNPVSLDIGYPAIN"

     misc_feature    25693..25974
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /note="PDZ domain of Rab3-interacting molecule 1 (RIM),
                     RIM2, piccolo and related domains; Region: PDZ_RIM-like;
                     cd06714"
                     /db_xref="CDD:467198"
     misc_feature    order(25753..25773,25816..25818,25825..25827,25915..25917,
                     25927..25929,25936..25941)
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:467198"
     misc_feature    26140..26514
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /note="C2 domain first repeat contained in
                     Rab3-interacting molecule (RIM) proteins; Region:
                     C2A_RIM1alpha; cd04031"
                     /db_xref="CDD:175997"
     misc_feature    order(26230..26232,26251..26253,26413..26415,26419..26421,
                     26437..26439)
                     /gene="cla-1"
                     /locus_tag="CELE_F45E4.3"
                     /note="Ca2+ binding site [ion binding]; other site"
                     /db_xref="CDD:175997"
ORIGIN      

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