2024-04-20 05:22:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001302909 3047 bp mRNA linear PLN 18-OCT-2018 DEFINITION Solanum lycopersicum protein argonaute 10 (LOC101259671), mRNA. ACCESSION NM_001302909 VERSION NM_001302909.1 KEYWORDS RefSeq. SOURCE Solanum lycopersicum (Lycopersicon esculentum) ORGANISM Solanum lycopersicum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JX467717.1. ##Evidence-Data-START## Transcript exon combination :: JX467717.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06134382, SAMN06134383 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3047 /organism="Solanum lycopersicum" /mol_type="mRNA" /db_xref="taxon:4081" /chromosome="9" /map="9" gene 1..3047 /gene="LOC101259671" /note="protein argonaute 10" /db_xref="GeneID:101259671" CDS 53..2932 /gene="LOC101259671" /note="AGO10A" /codon_start=1 /product="protein argonaute 10" /protein_id="NP_001289838.1" /db_xref="GeneID:101259671" /translation="
MNPVQKNPKTTQNGKGPPNQEPPNNKIHIQTSPPSRNRGRRRGRGGKKSDQGETFMRPSSRPCTAASKPVIAASVEATNVSGVESNGTSSGFPSSSKSLCFAPRPGYGQLGTKCIVKANHFLADFPDKELNQYDVTVIPEVSSRTVNRAIMAELVKLYKESHLGMRLPAYDGRKSLYTAGELPFKWKEFTIKLIDEDDVINGPKREREYKVVIKFVARANLHHLSEFLAGKRADGPKEALQILDIVLRELSIKRYCPVGRSFFSPDIRKPQPLGDGLEAWCGFYQSIRPTQMGLSLNIDMASAAFIEALPVIEFVAQLLGKDVSSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTTQPTRELVFPVDDNLTMKSVVEYFQEMYGFTIKNTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLSEKQITSLLKVTCQRPRDRENSILQTVQHNDYNEDPYAKEFGIKISEKQASVEARVLPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCNELTQMCQVSGMEFNPDPIIPIYMARPDQVEKALKHVYHSCVNKLKGKELELLLVILPDNNGSLYGDIKRICETDLGLITQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPARGTVSGGMIRDLLISFRKATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHKDRSSIDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMPETNSGSPHQGSSKAIRETGVRPLPALKENVKRVMFYC"
misc_feature 362..2929 /gene="LOC101259671" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
gaaagaaagttcagaacaacacattgtgatcaaaccccatttgcaaaacactatgaatccagttcagaaaaaccccaagaccactcaaaatggcaaagggccaccaaatcaagaacctccaaacaacaaaatccatatccagacttcacccccttcaagaaatagaggtagaaggagaggaagaggaggcaaaaagtcagatcaaggtgagacctttatgaggcctagttcaaggccttgtacagcagctagcaagccagttatagcagcttctgttgaagcaacaaatgtgtcaggagttgagagtaatggaactagctcagggtttccttcttcaagtaagtctttgtgttttgccccaagaccaggttatgggcaacttgggacaaaatgcattgtaaaagcaaaccattttttggctgattttccagacaaagagttgaatcagtatgatgttactgtaatccctgaagtgtcatcaagaactgtaaacagagctatcatggcagagctggtgaaactgtacaaagaatcccacctagggatgagattaccagcttatgatggcagaaagagtctttacactgctggtgaacttccttttaagtggaaggagtttaccattaagcttattgatgaagatgatgtgatcaatggtccaaagagagagagagaatataaagtggtgattaagtttgttgcaagagcaaatctacatcatctgagtgaatttcttgctggtaagcgcgctgacggtccaaaagaagctcttcaaattctggacattgttttgagagagctttcgatcaagaggtattgtccagttggaagatctttcttttcacctgatatacggaagcctcaacctcttggtgatggtttagaagcatggtgtggattctaccagagcattagaccgacccaaatgggcttgtcgcttaacattgatatggcttcagctgcatttattgaagctctaccagtgatagagtttgtagctcagcttctaggaaaagatgtgtcgtcaagacccttatctgactcggatcgtgtaaagattaagaaggctcttagaggagtgaaagttgaagtgacacacaggggcaatgtccggagaaagtatcgtgtttcaggactaacaactcagcccacgagggaactagtatttcctgttgatgacaatttaaccatgaagtcggttgttgaatactttcaagaaatgtatggctttactataaagaatacacatcttccatgccttcaagtagggaaccaaaagaaagccaactatttacctatggaggcgtgtaaaattgttgagggacaacgatacaccaaaaggttgagtgagaagcaaattacttctcttttgaaggtcacatgccaaagaccaagagatcgtgagaactcaatcttgcagactgttcaacacaatgattataatgaagacccatatgctaaggagtttggaatcaaaatcagtgaaaagcaagcatctgtggaagcccgtgtgttgcctgctccttggctaaaatatcacgagacggggaaggagaaggattgtctacctcaagttgggcagtggaatatgatgaacaagaaaatgataaatgggatgacagtcaaccgttgggcatgcatcaacttttcacgaagtgtccaagagagtgttgctcgtggcttttgtaacgaactcactcagatgtgtcaagtatctggaatggagttcaatccggacccaataattccaatatacatggccaggccagatcaagtagagaaagccttgaagcatgtatatcattcatgcgtaaacaagctaaaaggaaaagaacttgagcttctgttggtcattctaccagataacaatggttccctctatggtgacataaagcggatatgtgagactgatctcggtttaataacccaatgctgtctgacaaagcatgtattcaagatcagcaaacaatatttggcaaatgtatccttgaagatcaacgtcaagatgggtggtcgaaataccgtcctgttggatgctattagctgtagaataccattagtaagtgatatacctaccatcatattcggagcagatgtgacccaccctgaaaacggagaagattctagcccttcaattgcagctgtagtagcttctcaagattggcctgaggtgacaaaatacgccggtcttgtttgcgctcaagctcatagacaagaacttatacaagatttgtacaagacatggcatgatcctgcacgtggaacagttagtggtggcatgataagggatcttcttatatccttcagaaaggccacaggccaaaagccacaaaggataatcttttatcgggatggagtgagtgaaggtcaattttaccaagtactgcttttcgagttagatgcaattaggaaggcttgtgcgtctttagaaccaaattatcaaccgccagtaacttttatcgtggtacagaaacgacatcacacccgactatttgcaaataatcacaaggacaggagcagcattgataggagtggaaacatattgcctggtactgtggttgatacaaaaatctgtcatccaacagaattcgacttctatctttgtagccacgctggcattcagggtacgagccggcctgcacattaccatgttctgtgggatgaaaacaatttcacagcagacggaatccagtccttgactaacaatctctgctatacatatgcaagatgcacacgttctgtctctgtggttcctcctgcatattatgcacatttagctgcatttcgagccagattctacatggaaccagacatgcctgaaactaattcaggcagccctcatcaaggcagcagcaaggctatacgagagacgggtgttaggccattgcccgctcttaaagaaaatgtgaagagagtgatgttttattgttaggaagaagagataacaagtgagtagcaaatgtaacaaatagtaagtagggggttcagttcagaccacatgaatctttgtttgtaaatgtatgttgatcatcctaggttaattgtca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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