2024-03-29 06:29:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001286290 2021 bp mRNA linear VRT 04-JUL-2021 DEFINITION Haplochromis burtoni distal-less homeobox 1a (dlx1a), mRNA. ACCESSION NM_001286290 XM_005921507 VERSION NM_001286290.1 KEYWORDS RefSeq. SOURCE Haplochromis burtoni (Burton's mouthbrooder) ORGANISM Haplochromis burtoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis. REFERENCE 1 (bases 1 to 2021) AUTHORS Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S. TITLE Ancestral and derived attributes of the dlx gene repertoire, cluster structure and expression patterns in an African cichlid fish JOURNAL Evodevo 2 (1), 1 (2011) PUBMED 21205289 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FN667596.1. On Nov 1, 2013 this sequence version replaced XM_005921507.1. ##Evidence-Data-START## Transcript exon combination :: FN667596.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00761590, SAMN00761598 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2021 /organism="Haplochromis burtoni" /mol_type="mRNA" /db_xref="taxon:8153" gene 1..2021 /gene="dlx1a" /gene_synonym="dlx1" /note="distal-less homeobox 1a" /db_xref="GeneID:102297365" exon 1..464 /gene="dlx1a" /gene_synonym="dlx1" /inference="alignment:Splign:2.0.8" misc_feature 101..103 /gene="dlx1a" /gene_synonym="dlx1" /note="upstream in-frame stop codon" CDS 155..916 /gene="dlx1a" /gene_synonym="dlx1" /note="distal-less homeobox protein 1a; distal-less homeobox 1" /codon_start=1 /product="homeobox protein Dlx1a" /protein_id="NP_001273219.1" /db_xref="GeneID:102297365" /translation="
MTMTTIPESLNSPASGKTVFMEFGPPSQQMSPSSMSHGHYPMHCLHSAGHTQHDSYSPASSFPRSLGYPYVNSVGSHSTSPYLSTVQTYQNSSGLTQTRLEDAAPETEKNTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGGTIDSNALATGRGLSSGSPSVAPVWSSPTTVKTSMGTTGSYIPSYTSWYPTTHQESMQQSQLM"
misc_feature order(536..550,554..556,605..607,623..625,662..664, 668..673,680..685,689..697,701..706) /gene="dlx1a" /gene_synonym="dlx1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 542..703 /gene="dlx1a" /gene_synonym="dlx1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(542..544,551..553,671..673,680..685,692..694) /gene="dlx1a" /gene_synonym="dlx1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 465..664 /gene="dlx1a" /gene_synonym="dlx1" /inference="alignment:Splign:2.0.8" exon 665..2005 /gene="dlx1a" /gene_synonym="dlx1" /inference="alignment:Splign:2.0.8" ORIGIN
acagcatcattcctaggacttttcacgggcacaaactacattttcttatgaatggaaagagaaaaaatctgttcggcttaaattgggatccgtccttcactgagatcatagaaggaaaacaacaaaagcgagacaaggggaaccgccagaagagatgacaatgactacgattccagaaagtcttaatagccctgcctcaggaaaaaccgttttcatggagtttggacccccgagtcaacaaatgtcgccttcctccatgtctcacggacactatcccatgcactgtttacattctgcaggtcacacacagcacgacagctacagtccagcctcgtcgttccccagatccttgggttatccatacgtaaactccgtcggcagccattccaccagtccatatctcagcacagtacagacttaccaaaacagctcgggactcacgcagacacgattagaagatgcagcgccagaaacagagaaaaacacagtggtggaaggcggagaggtgcgcttcaacggcaaagggaaaaagattagaaaaccaaggactatatattcgagtttacaacttcaagccctgaacaggagatttcaacagactcagtatttggcgctaccggagagagctgagctcgcagcgtcgctgggtctcacccagacacaggtaaaaatttggtttcagaataaaagatccaaattcaagaagctgatgaagcaaggcggtggtacgatcgacagcaacgctttggccaccggccgtggactttccagtggttctccctcggtggcacctgtctggagctcgccgaccaccgtgaagacttcaatgggcacgaccggatcttacattcccagctacacctcatggtatccaaccacacaccaagagtctatgcaacagtcacagctcatgtgagcagagagctcagcatcaggatggtgaaaggcccagcagccgctgagcgcggctcagcattgacaatgcacaacaaacaacaagattcccggagtttgctgccgcatcccgccagctgacacagaggcctcctcataccgaagacggcgagcagagatacagaagaagagaagaggtcagacagagtgaaaaggcgcacaattcgccagagggcaaccagtccgtgaccgtccctgacagcggaaatcgcagacaaaaggatcatttgttgtttttttttggctgcttttgtttgttttggtttttttcccccaaatgtcggtttctgtttgttttcaaactcatatttgtgtgaacacttcggttgttgagctgtaggctacatgtttattagaaaacacgtgtttgtttacgccagattgtcggggcccaaggtgatgacggccttaaaagtcaatttgcattcatcgacagttaaaagggccacttaggccacagcagagtttctctaaccaaataattaacgataaattccagcggtagccatcaagccgctccactcacagcgcattcaaccgcagagcacaggctgctgtgcgcagagcctcgagatgctactatgttgtttctacgtgtttgttatttaagttaaattattcgggctagttttttctgtttgaggtcagtctgtgttcagtttgtaagcgtgtttgaaatgacaacactgtgttgttaatgctgcactaacgcaagcaaagcttttttatgccgtgccccgatgttatgtgaaaaatgtaaaaggcctgacgatttgctgctttagaaaaaaaattgtcctgagggtgagcagctcatttgtcactgtattttgcacataattttctttttttctgttcctttttttgtgctgtatactggatacgctgtgaaacagggtttaggctttgtgtagcttactcgtcgaaatgtgtttagtcaacataggaaatatttagttttgtattgatcaccttaatttatttatctgtttctgaagtttatgtacataatgtgcaaagtttcaaaagcagtaaaatatgatttaaattaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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