2021-01-24 05:48:23, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS NM_001277769 826 bp mRNA linear VRT 29-JUN-2020 DEFINITION Gallus gallus claudin 10 (CLDN10), transcript variant 3, mRNA. ACCESSION NM_001277769 VERSION NM_001277769.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 826) AUTHORS Collins MM, Baumholtz AI, Simard A, Gregory M, Cyr DG and Ryan AK. TITLE Claudin-10 is required for relay of left-right patterning cues from Hensen's node to the lateral plate mesoderm JOURNAL Dev. Biol. 401 (2), 236-248 (2015) PUBMED 25744724 REMARK GeneRIF: The data demonstrate a novel role for Claudin-10 during the transmission of laterality information from Hensen's node to both the left and right sides of the embryo. [claudin-10] REFERENCE 2 (bases 1 to 826) AUTHORS Seo HW, Rengaraj D, Choi JW, Ahn SE, Song YS, Song G and Han JY. TITLE Claudin 10 is a glandular epithelial marker in the chicken model as human epithelial ovarian cancer JOURNAL Int. J. Gynecol. Cancer 20 (9), 1465-1473 (2010) PUBMED 21370593 REMARK GeneRIF: New insight into using the chicken as a suitable animal model for investigating the effect and function of CLDN in human ovarian cancer. REFERENCE 3 (bases 1 to 826) AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J and Cogburn LA. TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index JOURNAL Physiol. Genomics 25 (3), 514-524 (2006) PUBMED 16554550 REFERENCE 4 (bases 1 to 826) AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ. TITLE A comprehensive collection of chicken cDNAs JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002) PUBMED 12445392 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CV038199.1, CD216622.1, BX930125.1 and AADN05000384.1. Transcript Variant: This variant (3) has an alternate first exon in place of the first exon of variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BU287383.1, ERR2365562.148579.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2201360, SAMEA2201361 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-108 CV038199.1 100-207 109-322 CD216622.1 208-421 323-818 BX930125.1 454-949 819-826 AADN05000384.1 6787911-6787918 FEATURES Location/Qualifiers source 1..826 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="1" /map="1" /breed="Leghorn" gene 1..826 /gene="CLDN10" /gene_synonym="claudin-10" /note="claudin 10" /db_xref="CGNC:13756" /db_xref="GeneID:418790" exon 1..93 /gene="CLDN10" /gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" CDS 24..560 /gene="CLDN10" /gene_synonym="claudin-10" /note="isoform 3 is encoded by transcript variant 3" /codon_start=1 /product="claudin-10 isoform 3" /protein_id="NP_001264698.1" /db_xref="CGNC:13756" /db_xref="GeneID:418790" /translation="
MNCAGNALGAFHCRPHLTIFKVEGYIQACRGLMISAVCLGFFGSVFGLVGMKCTKIGGSDQNKARIACLAGLIFILCGLCSMTGCSLYAHRITSEFFDPSFVAQKYELGAALFIGWAGASLCIIGGSIFCFSIAENSKSPRRAYAYNGAASVMSSRTKIHNSVPDKTSPKHFDKNAYV"
misc_feature <81..410 /gene="CLDN10" /gene_synonym="claudin-10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:304458" exon 94..255 /gene="CLDN10" /gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" exon 256..337 /gene="CLDN10" /gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" exon 338..445 /gene="CLDN10" /gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" exon 446..826 /gene="CLDN10" /gene_synonym="claudin-10" /inference="alignment:Splign:2.1.0" ORIGIN
cctgggttttccagggtctgtggatgaactgtgcgggcaacgcgctgggtgcttttcactgcagacctcaccttactatcttcaaagtggaaggttacatccaagcctgcagaggactgatgatctccgctgtctgtctgggtttctttggctccgtttttggactggttgggatgaagtgcacaaaaatcggcggctctgatcaaaataaagcaagaatagcttgtttagctggactgattttcatactgtgtgggctgtgctccatgactggttgttccctgtatgcacacaggattacgtctgagttctttgatccttcttttgttgcacaaaagtatgaattaggagcagctttattcattggatgggctggagcttcactctgcatcattggtggcagtatattctgcttctcaatagctgagaacagtaaatctccaaggagagcgtatgcatataatggagccgcatctgtgatgtcgtctcgtacaaagattcacaacagtgtcccagacaaaacctcaccaaagcactttgacaagaacgcttacgtttaagtgtacttttctaagatctgaagccagttttaaaaatgagtttgtatgtttcattcagggtgatttccccccccacctccccacaacacaatggaattaccactaagaatgaatttgtaaggtgttatcttgcagctttttccacgttgatgtaaattttattatattttaagattgatgtttgtattataaagtttatacctgcaaatcatgcattgatgctgctttctaaaaaagaaaaataaagagggtatttacagatgcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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