2024-03-28 23:22:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001246335 1507 bp mRNA linear VRT 28-MAR-2022 DEFINITION Oncorhynchus mykiss caspase 3, apoptosis-related cysteine peptidase b (casp3b), mRNA. ACCESSION NM_001246335 VERSION NM_001246335.1 KEYWORDS RefSeq. SOURCE Oncorhynchus mykiss (rainbow trout) ORGANISM Oncorhynchus mykiss Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. REFERENCE 1 (bases 1 to 1507) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FR751081.1. ##Evidence-Data-START## Transcript exon combination :: FR751081.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06640877, SAMN06640882 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1507 /organism="Oncorhynchus mykiss" /mol_type="mRNA" /db_xref="taxon:8022" /chromosome="31" /map="31" gene 1..1507 /gene="casp3b" /gene_synonym="casp3" /note="caspase 3, apoptosis-related cysteine peptidase b" /db_xref="GeneID:100653443" misc_feature 120..122 /gene="casp3b" /gene_synonym="casp3" /note="upstream in-frame stop codon" CDS 222..1067 /gene="casp3b" /gene_synonym="casp3" /EC_number="3.4.22.56" /function="apoptosis-related cysteine protease" /note="casp 3a; caspase 3a" /codon_start=1 /product="caspase-3b" /protein_id="NP_001233264.1" /db_xref="GeneID:100653443" /translation="
MSDLVDAKCITAQWPGSPSLPRFTIENQKVDARPPADMYTYKMNYPSLGQCVIINNKNFDRRTGMSSRKGTDVDAGYARKVFERLGYNVKVANDQTVQQIQQLLYTVSQDNHSQSASFVCVMLSHGGEGVFYGTDGNVELQKLTGLFRGDRCKTLVGKPKLFFIQACRGSDLDCGIETDSVAGGIETDSVAGNYPERIPVEADFLYAYSTAPGYYSWRNTDKGSWFIQALCEMLQRYGKQLDIMQIMTRVNHKVAHDFEASANKQIPCIVSMLTKHLYFPQ"
misc_feature 339..1061 /gene="casp3b" /gene_synonym="casp3" /note="Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide...; Region: CASc; cd00032" /db_xref="CDD:237997" misc_feature order(423..425,597..599,714..716,735..737,864..881, 891..896) /gene="casp3b" /gene_synonym="casp3" /note="substrate pocket [chemical binding]; other site" /db_xref="CDD:237997" misc_feature order(594..596,720..722) /gene="casp3b" /gene_synonym="casp3" /note="active site" /db_xref="CDD:237997" misc_feature order(738..740,819..824,843..845,852..854,861..863, 930..932,954..956,972..974,1011..1013,1026..1031, 1035..1037,1044..1049) /gene="casp3b" /gene_synonym="casp3" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:237997" misc_feature order(741..743,816..818) /gene="casp3b" /gene_synonym="casp3" /note="proteolytic cleavage site [active]" /db_xref="CDD:237997" regulatory 1475..1479 /regulatory_class="polyA_signal_sequence" /gene="casp3b" /gene_synonym="casp3" polyA_site 1490 /gene="casp3b" /gene_synonym="casp3" ORIGIN
ggccatcaccctacccagctagtatgctacagaggagaccctattccagacccatcagtagtgaacacagtggaccccctgacaaaagtacttagctgttctaatggtttgaagtaccctgagaactccctgctgccacctgtgtatttcaacggtttaacgcaaatacaactataacgctaggcgttgtaaagactgattgcacaactgagattggcaccatgtctgatttggtggatgccaaatgcataactgcacaatggccagggagtccctcactgccaaggtttactatagagaatcagaaagtagatgctaggcctccagctgacatgtacacatataaaatgaactatcccagccttggacaatgtgtcatcatcaacaacaagaactttgacaggagaacaggaatgagttctcgcaagggaacagatgtggatgctggctatgcaaggaaagtcttcgaacgtttggggtacaacgtgaaagttgccaatgaccagacggtgcagcagatccaacagctgctttacactgtgtctcaagacaaccacagccagtcagcctcctttgtgtgtgtgatgctgagccatggaggagagggtgtgttctatggcacagatggaaatgtggagctccagaagctcaccggactcttcaggggcgaccgctgcaaaacgctggtgggaaagcccaaactcttcttcatccaggcgtgccgtggctctgatctggactgtggaatagagacagacagtgttgctggtggaatagagacggacagcgttgctggtaactatccagagaggattccagtggaggcagactttctctatgcttattctacagccccaggctactactcctggaggaacaccgacaagggctcctggttcatccaggccctctgtgagatgttacaaaggtatggcaaacagctggacataatgcagatcatgacacgtgttaaccacaaggtggcacatgacttcgaggcttccgccaacaagcagatcccttgcattgtgtctatgttgaccaaacatctctactttccacagtgattgtatatcctgtgggaccattttacatatttgcacagtgtctgctggggttctaaagaccattaaataatacagtgggattctctgcactggaccaaataccactgtggataatcacttattcaaatacttctgtttggggaaagtctaaaagcgaaaaggtatgaaatgtttacccttgaggcctaaagggcattatgttggaccacagacaatggctttttaatggggaaaggctggcattgagtattgactacggaatagcagtacttgctattgatatgtagttaattcatttggaatggaattaaaatgctctgaattgtagggtaaatacatgttcagataacatggaatgaaagtcactcaggctttaaaagtattgtattgtgttatgtctctatataaataatctgtcactcaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]