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2024-03-28 23:22:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001246335            1507 bp    mRNA    linear   VRT 28-MAR-2022
DEFINITION  Oncorhynchus mykiss caspase 3, apoptosis-related cysteine peptidase
            b (casp3b), mRNA.
ACCESSION   NM_001246335
VERSION     NM_001246335.1
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus mykiss (rainbow trout)
  ORGANISM  Oncorhynchus mykiss
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FR751081.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FR751081.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06640877, SAMN06640882
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Oncorhynchus mykiss"
                     /mol_type="mRNA"
                     /db_xref="taxon:8022"
                     /chromosome="31"
                     /map="31"
     gene            1..1507
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="caspase 3, apoptosis-related cysteine peptidase b"
                     /db_xref="GeneID:100653443"
     misc_feature    120..122
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="upstream in-frame stop codon"
     CDS             222..1067
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /EC_number="3.4.22.56"
                     /function="apoptosis-related cysteine protease"
                     /note="casp 3a; caspase 3a"
                     /codon_start=1
                     /product="caspase-3b"
                     /protein_id="NP_001233264.1"
                     /db_xref="GeneID:100653443"
                     /translation="
MSDLVDAKCITAQWPGSPSLPRFTIENQKVDARPPADMYTYKMNYPSLGQCVIINNKNFDRRTGMSSRKGTDVDAGYARKVFERLGYNVKVANDQTVQQIQQLLYTVSQDNHSQSASFVCVMLSHGGEGVFYGTDGNVELQKLTGLFRGDRCKTLVGKPKLFFIQACRGSDLDCGIETDSVAGGIETDSVAGNYPERIPVEADFLYAYSTAPGYYSWRNTDKGSWFIQALCEMLQRYGKQLDIMQIMTRVNHKVAHDFEASANKQIPCIVSMLTKHLYFPQ"
     misc_feature    339..1061
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; Region: CASc;
                     cd00032"
                     /db_xref="CDD:237997"
     misc_feature    order(423..425,597..599,714..716,735..737,864..881,
                     891..896)
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="substrate pocket [chemical binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(594..596,720..722)
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="active site"
                     /db_xref="CDD:237997"
     misc_feature    order(738..740,819..824,843..845,852..854,861..863,
                     930..932,954..956,972..974,1011..1013,1026..1031,
                     1035..1037,1044..1049)
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:237997"
     misc_feature    order(741..743,816..818)
                     /gene="casp3b"
                     /gene_synonym="casp3"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
     regulatory      1475..1479
                     /regulatory_class="polyA_signal_sequence"
                     /gene="casp3b"
                     /gene_synonym="casp3"
     polyA_site      1490
                     /gene="casp3b"
                     /gene_synonym="casp3"
ORIGIN      
ggccatcaccctacccagctagtatgctacagaggagaccctattccagacccatcagtagtgaacacagtggaccccctgacaaaagtacttagctgttctaatggtttgaagtaccctgagaactccctgctgccacctgtgtatttcaacggtttaacgcaaatacaactataacgctaggcgttgtaaagactgattgcacaactgagattggcaccatgtctgatttggtggatgccaaatgcataactgcacaatggccagggagtccctcactgccaaggtttactatagagaatcagaaagtagatgctaggcctccagctgacatgtacacatataaaatgaactatcccagccttggacaatgtgtcatcatcaacaacaagaactttgacaggagaacaggaatgagttctcgcaagggaacagatgtggatgctggctatgcaaggaaagtcttcgaacgtttggggtacaacgtgaaagttgccaatgaccagacggtgcagcagatccaacagctgctttacactgtgtctcaagacaaccacagccagtcagcctcctttgtgtgtgtgatgctgagccatggaggagagggtgtgttctatggcacagatggaaatgtggagctccagaagctcaccggactcttcaggggcgaccgctgcaaaacgctggtgggaaagcccaaactcttcttcatccaggcgtgccgtggctctgatctggactgtggaatagagacagacagtgttgctggtggaatagagacggacagcgttgctggtaactatccagagaggattccagtggaggcagactttctctatgcttattctacagccccaggctactactcctggaggaacaccgacaagggctcctggttcatccaggccctctgtgagatgttacaaaggtatggcaaacagctggacataatgcagatcatgacacgtgttaaccacaaggtggcacatgacttcgaggcttccgccaacaagcagatcccttgcattgtgtctatgttgaccaaacatctctactttccacagtgattgtatatcctgtgggaccattttacatatttgcacagtgtctgctggggttctaaagaccattaaataatacagtgggattctctgcactggaccaaataccactgtggataatcacttattcaaatacttctgtttggggaaagtctaaaagcgaaaaggtatgaaatgtttacccttgaggcctaaagggcattatgttggaccacagacaatggctttttaatggggaaaggctggcattgagtattgactacggaatagcagtacttgctattgatatgtagttaattcatttggaatggaattaaaatgctctgaattgtagggtaaatacatgttcagataacatggaatgaaagtcactcaggctttaaaagtattgtattgtgttatgtctctatataaataatctgtcactcaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]