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2024-03-29 09:34:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001206507            4348 bp    mRNA    linear   MAM 29-JUN-2020
DEFINITION  Bos taurus NRDE-2, necessary for RNA interference, domain
            containing (NRDE2), mRNA.
ACCESSION   NM_001206507 XM_001788996 XM_002691113
VERSION     NM_001206507.1
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol. 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            NKLS02000010.1.
            
            On or before May 4, 2011 this sequence version replaced
            XM_002691113.1, XM_001788996.2.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data. The genomic coordinates used for the transcript record were
            predicted based on cow transcript alignments and on full-length
            homologous protein alignment with human NP_060440.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMN03145412,
                              SAMN03145413 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                NKLS02000010.1     101923621-101923715 c
            96-207              NKLS02000010.1     101907703-101907814 c
            208-441             NKLS02000010.1     101905459-101905692 c
            442-591             NKLS02000010.1     101901824-101901973 c
            592-1042            NKLS02000010.1     101894426-101894876 c
            1043-1448           NKLS02000010.1     101892592-101892997 c
            1449-1582           NKLS02000010.1     101891088-101891221 c
            1583-1703           NKLS02000010.1     101889492-101889612 c
            1704-1879           NKLS02000010.1     101887106-101887281 c
            1880-2266           NKLS02000010.1     101883732-101884118 c
            2267-3168           NKLS02000010.1     101881620-101882521 c
            3169-3307           NKLS02000010.1     101880444-101880582 c
            3308-3379           NKLS02000010.1     101876775-101876846 c
            3380-4348           NKLS02000010.1     101875399-101876367 c
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="10"
                     /map="10"
                     /breed="Hereford"
     gene            1..4348
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing"
                     /db_xref="BGD:BT21207"
                     /db_xref="GeneID:100138828"
                     /db_xref="VGNC:VGNC:32259"
     exon            1..95
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..3505
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2"
                     /protein_id="NP_001193436.1"
                     /db_xref="BGD:BT21207"
                     /db_xref="GeneID:100138828"
                     /db_xref="VGNC:VGNC:32259"
                     /translation="
MALFPAFAGVAEAPDSGRKELDWLSNPSFHVGAITSLSRHTQETTAAPVSEGSPLTRSPLKSEPSGESDANRKPKETSRKKKKEKKKKRKLQRHEKTKRKHGPSGSSGSESDTDSAKDSPSRSLRDSKRESEKPNQGDDAAADAGRHCVWLEDIQALSGETFRMDKKPDPANWEYKSLYRGDIARYKRKGDSCLGLNPKKQCISWEGNSTEKKRSHKHIERYFTKKSVGLMNVDGLAVSSQPEALALEPLSFIPVKGVDDAAPPATSWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDRESALLKARVEEFNRKVRESPRDTELWMAFVAFQDELMRSPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCAEFWEPATLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQEWGGWVAVGADDDDEEPEEEDQEIRDKALPRWQIWLAAERSRDHRHWRPWRPDKARKQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQMMAAFLQFLGVPSGFSPPTPCLYLAMDENSIFDSELYDEKPLTFLDLSCSGVSCVGRMEPLGGRRWPRGPSREGEEFIRNVFHLALPLFAGRERSQLCVSWLRYEITKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWQQYAHLEWLLGNTEDARKVFDAALGTAGSRGLEDPELCELGLLYAALETELSPPVGGAAPARAVHVLSGLAERRPYGPCTGQVSAVHVLKARRAYEHALQDWLGERRGPDPGPPDRFSRLVSLAKCFMLFQYLTVGVDAAGRVYEQVFAGLRGSVSSEAAGLEGALEAVTLMHTSLLRFHGRVAAHPLAPLREALSEALRLYPGNQLLWRAYVQIQSKSHSASRTRRFFHAITRSTKLLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPETGLTHRIRALFESAVRSDHGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKALYMDAVEYFPDEMQEVVDLMTEKELRVRLPLEELELLLED"
     misc_feature    518..805
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(518..544,551..556,566..571,575..577,581..625,
                     632..640,644..652,674..682,692..697,701..706,713..733,
                     758..766,779..805)
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412062"
     misc_feature    974..1972
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:429988"
     exon            96..207
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            208..441
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            442..591
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            592..1042
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..1448
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1582
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1703
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1879
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..2266
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            2267..3168
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            3169..3307
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            3308..3379
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
     exon            3380..4348
                     /gene="NRDE2"
                     /gene_synonym="C10H14orf102; C14orf102"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atctttgtggggtgaggaggcggcgcggcctgtgaccatggcgctcttccccgcctttgcaggtgtcgccgaggctccggacagcgggaggaaagaattagactggctgagcaaccccagcttccatgttggagccataacgtccctgagccgacacactcaagagaccactgcagcccctgtttctgaagggtcaccactgacaaggagtcctctgaaatcagagccttcaggtgaaagtgacgctaacagaaagcccaaagaaacgagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcttcagcgccacgagaaaaccaagagaaaacacgggccgtcgggtagcagtgggtctgagtcagacactgattctgcaaaggacagcccttccagaagcctcagagacagtaaaagggaatcagagaaaccgaatcaaggagacgatgccgccgcggatgccggacgtcactgtgtctggcttgaggacatccaggctctgtcgggggaaaccttccgaatggataagaagccggatcctgccaactgggagtacaagtctctctaccgaggagacattgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcaatgtatatcttgggaggggaattccacagaaaagaagcgttcccacaagcacatcgagcgctactttacgaagaagagcgtggggttgatgaacgtggacggcctcgccgtcagcagtcagcccgaagctctggcgttggagccgctctcctttatcccggtgaagggcgtggatgacgcggctccccctgctaccagctggctgaaccctctggggatttacgaccaagccactacgcagtggttacagggacagggtccttcagagcaggagtccaggccaccagactcacagcccgacagagagagcgcgctcctcaaggccagggtggaggagtttaacaggaaggtccgcgagagccctcgggacacggagctgtggatggccttcgttgctttccaggacgagctcatgagaagtccgggcctctatgccgtggaggaaggagagccggagacgcggaagcggtccctccggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgaagctctgcgccgagttctgggagcccgccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttctgccagagccagttcagcaccttctccgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccccgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttccttcggcaggctggccactccgagaaggccgtgtctctgttccaggccatggtcgacttcacgttcttcaagccggacagcgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccgaggctggcgagcctggatgcaccagcaggagtggggcggctgggtggccgtcggcgcagatgacgacgacgaggagccggaggaggaagaccaggagattagagacaaggctctgccccggtggcagatctggctggccgccgagcggtcccgagaccacaggcactggaggccgtggcgcccggacaaggccaggaagcagacggaggaagactgcgaggaccccgagagacaggtgttgtttgacgatcttgggcagtctctgatccgactgtccagcccggatctccagtttcagatgatggcggccttcctgcagttcctgggggtgccttccggcttcagcccccccaccccctgcctctatctggccatggatgagaacagcatcttcgacagcgaactttatgatgaaaagcctttgactttcctcgacctctcctgctccggcgtcagctgtgtaggccgcatggagcccctgggtggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaatgtcttccacctggcactgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccggacaaccgcaacagcttttgcctctggcagcagtatgcgcatctggagtggttgctgggcaacacagaggatgcccggaaggtcttcgacgcggccctgggcactgccgggagccggggcctggaggacccggagctctgtgagctcggcctgctctacgccgcgctggagacggagctgtcgccgcccgtgggcggggccgccccggcccgcgccgtgcacgtgctgagcgggctggcggagcgccgcccctacgggccgtgcacgggacaggtgtcggctgtgcacgttttgaaggctcggagggcatacgaacacgcgctgcaggactggctgggggagcgccgcggccccgacccaggcccccccgaccgcttcagccgcctggtcagcctggcgaagtgcttcatgctcttccagtacctgaccgtgggggtcgacgccgctgggcgcgtctacgagcaggtgtttgcggggctcaggggctctgtctcctcggaggctgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacggcagggttgccgcccacccgctggctcccctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcagagcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccaccaaactcctggagccctggctgtttgcgatcgaagcggagaggatgcggaagaggctggtggacgccgtgcagagggtggacggtagagaggtccatgccacccttcccgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagcgaccacggcagccagtgccccctgctgtggaggatgtacctgaacttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaaggcgctgtacatggatgccgtcgagtacttccccgacgagatgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctcgaggagctggagctgctgctggaggactagacgctgggggccgggcccagccccggaacacgggcacgcgcatgcccagacctgtgccctgaagggtcctccctgacgcgcgtctaggctgtcagtctcaccttctgcagtttctgcacatgcgaatgacacaaagctgacattctgcacacgatacatgtgaatgtgtggaatgtgaatgtggccggttggcgtgcacagacaaggatcacgccaaagctgtcacggctcgtgtgggtccttctggtccactctcccctgcccagcccgggtgaaggttcttctgtgggcatccttggggatcctgccaagtctcctggctcttgcagtccaaagaaaggtctggttactcaccaggccctccgccctgcggctggtgagcccattctgcccatttttcagaccagagcagctgggagtcgtgtaaagcttggagttctcagctgcatcacacgtgtccttcctgttcccggagctccactcgtggacatctcgcctgcagacccggcagccagcgtcgccggaagctcatgcgcctggagaccctgggcccacccggccctgctgagtcagatggggctctaggaggactgagtcgggactgaacaaacaaggaccccgctgcaggggagcgcggcctgctcctccccagcaaacccatctctgcctcagagacgccgaacgttcgcttccagctgcgtcagctgcgctctcatccgattttcaagagcggtgatcaacacccgacagagcggaaatgctttttgttctccgaggtcctgcttttttaaacacagtggacttctctgcattgcgtttcttattaaatcatgctctctagaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]