2024-03-29 09:34:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001206507 4348 bp mRNA linear MAM 29-JUN-2020 DEFINITION Bos taurus NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION NM_001206507 XM_001788996 XM_002691113 VERSION NM_001206507.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 4348) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NKLS02000010.1. On or before May 4, 2011 this sequence version replaced XM_002691113.1, XM_001788996.2. Sequence Note: This RefSeq record was created from genomic sequence data. The genomic coordinates used for the transcript record were predicted based on cow transcript alignments and on full-length homologous protein alignment with human NP_060440.2. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMN03145412, SAMN03145413 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-95 NKLS02000010.1 101923621-101923715 c 96-207 NKLS02000010.1 101907703-101907814 c 208-441 NKLS02000010.1 101905459-101905692 c 442-591 NKLS02000010.1 101901824-101901973 c 592-1042 NKLS02000010.1 101894426-101894876 c 1043-1448 NKLS02000010.1 101892592-101892997 c 1449-1582 NKLS02000010.1 101891088-101891221 c 1583-1703 NKLS02000010.1 101889492-101889612 c 1704-1879 NKLS02000010.1 101887106-101887281 c 1880-2266 NKLS02000010.1 101883732-101884118 c 2267-3168 NKLS02000010.1 101881620-101882521 c 3169-3307 NKLS02000010.1 101880444-101880582 c 3308-3379 NKLS02000010.1 101876775-101876846 c 3380-4348 NKLS02000010.1 101875399-101876367 c FEATURES Location/Qualifiers source 1..4348 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="10" /map="10" /breed="Hereford" gene 1..4348 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /note="NRDE-2, necessary for RNA interference, domain containing" /db_xref="BGD:BT21207" /db_xref="GeneID:100138828" /db_xref="VGNC:VGNC:32259" exon 1..95 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" CDS 38..3505 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="NP_001193436.1" /db_xref="BGD:BT21207" /db_xref="GeneID:100138828" /db_xref="VGNC:VGNC:32259" /translation="
MALFPAFAGVAEAPDSGRKELDWLSNPSFHVGAITSLSRHTQETTAAPVSEGSPLTRSPLKSEPSGESDANRKPKETSRKKKKEKKKKRKLQRHEKTKRKHGPSGSSGSESDTDSAKDSPSRSLRDSKRESEKPNQGDDAAADAGRHCVWLEDIQALSGETFRMDKKPDPANWEYKSLYRGDIARYKRKGDSCLGLNPKKQCISWEGNSTEKKRSHKHIERYFTKKSVGLMNVDGLAVSSQPEALALEPLSFIPVKGVDDAAPPATSWLNPLGIYDQATTQWLQGQGPSEQESRPPDSQPDRESALLKARVEEFNRKVRESPRDTELWMAFVAFQDELMRSPGLYAVEEGEPETRKRSLRLVLEKKLAILERAIESNPSSVDLKLAKLKLCAEFWEPATLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIQSLYGKCLSTLSAVRDGSIVSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQEWGGWVAVGADDDDEEPEEEDQEIRDKALPRWQIWLAAERSRDHRHWRPWRPDKARKQTEEDCEDPERQVLFDDLGQSLIRLSSPDLQFQMMAAFLQFLGVPSGFSPPTPCLYLAMDENSIFDSELYDEKPLTFLDLSCSGVSCVGRMEPLGGRRWPRGPSREGEEFIRNVFHLALPLFAGRERSQLCVSWLRYEITKVVWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWQQYAHLEWLLGNTEDARKVFDAALGTAGSRGLEDPELCELGLLYAALETELSPPVGGAAPARAVHVLSGLAERRPYGPCTGQVSAVHVLKARRAYEHALQDWLGERRGPDPGPPDRFSRLVSLAKCFMLFQYLTVGVDAAGRVYEQVFAGLRGSVSSEAAGLEGALEAVTLMHTSLLRFHGRVAAHPLAPLREALSEALRLYPGNQLLWRAYVQIQSKSHSASRTRRFFHAITRSTKLLEPWLFAIEAERMRKRLVDAVQRVDGREVHATLPETGLTHRIRALFESAVRSDHGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKALYMDAVEYFPDEMQEVVDLMTEKELRVRLPLEELELLLED"
misc_feature 518..805 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(518..544,551..556,566..571,575..577,581..625, 632..640,644..652,674..682,692..697,701..706,713..733, 758..766,779..805) /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 974..1972 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" exon 96..207 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 208..441 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 442..591 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 592..1042 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 1043..1448 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 1449..1582 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 1583..1703 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 1704..1879 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 1880..2266 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 2267..3168 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 3169..3307 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 3308..3379 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" exon 3380..4348 /gene="NRDE2" /gene_synonym="C10H14orf102; C14orf102" /inference="alignment:Splign:2.1.0" ORIGIN
atctttgtggggtgaggaggcggcgcggcctgtgaccatggcgctcttccccgcctttgcaggtgtcgccgaggctccggacagcgggaggaaagaattagactggctgagcaaccccagcttccatgttggagccataacgtccctgagccgacacactcaagagaccactgcagcccctgtttctgaagggtcaccactgacaaggagtcctctgaaatcagagccttcaggtgaaagtgacgctaacagaaagcccaaagaaacgagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcttcagcgccacgagaaaaccaagagaaaacacgggccgtcgggtagcagtgggtctgagtcagacactgattctgcaaaggacagcccttccagaagcctcagagacagtaaaagggaatcagagaaaccgaatcaaggagacgatgccgccgcggatgccggacgtcactgtgtctggcttgaggacatccaggctctgtcgggggaaaccttccgaatggataagaagccggatcctgccaactgggagtacaagtctctctaccgaggagacattgccagatacaagaggaaaggagactcctgcctcggcctcaacccgaagaagcaatgtatatcttgggaggggaattccacagaaaagaagcgttcccacaagcacatcgagcgctactttacgaagaagagcgtggggttgatgaacgtggacggcctcgccgtcagcagtcagcccgaagctctggcgttggagccgctctcctttatcccggtgaagggcgtggatgacgcggctccccctgctaccagctggctgaaccctctggggatttacgaccaagccactacgcagtggttacagggacagggtccttcagagcaggagtccaggccaccagactcacagcccgacagagagagcgcgctcctcaaggccagggtggaggagtttaacaggaaggtccgcgagagccctcgggacacggagctgtggatggccttcgttgctttccaggacgagctcatgagaagtccgggcctctatgccgtggaggaaggagagccggagacgcggaagcggtccctccggctggtcctggagaagaagctggccatcctggagcgggccatcgagagcaacccgagcagtgtggacctgaagctcgccaagctgaagctctgcgccgagttctgggagcccgccactctgctcaaagagtggcagaaactgatcttcttacatcccaacaacacagccctctggcagaaatacctgttgttctgccagagccagttcagcaccttctccgtatcaaaaattcagagtctgtacgggaagtgcttgagcaccctgtccgccgtgagggacggcagcatcgtctcccaccccgagctgcccggcaccgaggaggccatgtttgccctcttcctccagcagtgccacttccttcggcaggctggccactccgagaaggccgtgtctctgttccaggccatggtcgacttcacgttcttcaagccggacagcgtgaagggcctgcccaccaaaggccaggtggagttctttgagcccttctgggacagcggcgagccccgggccggggagaagggcgcccgaggctggcgagcctggatgcaccagcaggagtggggcggctgggtggccgtcggcgcagatgacgacgacgaggagccggaggaggaagaccaggagattagagacaaggctctgccccggtggcagatctggctggccgccgagcggtcccgagaccacaggcactggaggccgtggcgcccggacaaggccaggaagcagacggaggaagactgcgaggaccccgagagacaggtgttgtttgacgatcttgggcagtctctgatccgactgtccagcccggatctccagtttcagatgatggcggccttcctgcagttcctgggggtgccttccggcttcagcccccccaccccctgcctctatctggccatggatgagaacagcatcttcgacagcgaactttatgatgaaaagcctttgactttcctcgacctctcctgctccggcgtcagctgtgtaggccgcatggagcccctgggtggccggcgctggccccggggtcccagtcgagagggcgaggagtttatccgcaatgtcttccacctggcactgcctctgtttgcaggcagggagcggtctcagctctgcgtctcctggctacggtacgagatcaccaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccggacaaccgcaacagcttttgcctctggcagcagtatgcgcatctggagtggttgctgggcaacacagaggatgcccggaaggtcttcgacgcggccctgggcactgccgggagccggggcctggaggacccggagctctgtgagctcggcctgctctacgccgcgctggagacggagctgtcgccgcccgtgggcggggccgccccggcccgcgccgtgcacgtgctgagcgggctggcggagcgccgcccctacgggccgtgcacgggacaggtgtcggctgtgcacgttttgaaggctcggagggcatacgaacacgcgctgcaggactggctgggggagcgccgcggccccgacccaggcccccccgaccgcttcagccgcctggtcagcctggcgaagtgcttcatgctcttccagtacctgaccgtgggggtcgacgccgctgggcgcgtctacgagcaggtgtttgcggggctcaggggctctgtctcctcggaggctgccggcctggagggcgccctggaggccgtcaccctgatgcacaccagcctgctcaggttccacggcagggttgccgcccacccgctggctcccctgcgagaggcgctctcagaggctttacggttgtacccgggcaaccagcttctctggagggcgtacgtgcagattcagagcaagtcgcacagcgccagcaggaccagaagattcttccacgccatcaccaggtccaccaaactcctggagccctggctgtttgcgatcgaagcggagaggatgcggaagaggctggtggacgccgtgcagagggtggacggtagagaggtccatgccacccttcccgagaccggcctgacgcaccggatcagagccctgtttgagagcgccgtgcggagcgaccacggcagccagtgccccctgctgtggaggatgtacctgaacttcctggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcactgcagaattgtccttgggcaaaggcgctgtacatggatgccgtcgagtacttccccgacgagatgcaggaggtcgtggacctgatgacggagaaggagctgcgggtgcgcctgccgctcgaggagctggagctgctgctggaggactagacgctgggggccgggcccagccccggaacacgggcacgcgcatgcccagacctgtgccctgaagggtcctccctgacgcgcgtctaggctgtcagtctcaccttctgcagtttctgcacatgcgaatgacacaaagctgacattctgcacacgatacatgtgaatgtgtggaatgtgaatgtggccggttggcgtgcacagacaaggatcacgccaaagctgtcacggctcgtgtgggtccttctggtccactctcccctgcccagcccgggtgaaggttcttctgtgggcatccttggggatcctgccaagtctcctggctcttgcagtccaaagaaaggtctggttactcaccaggccctccgccctgcggctggtgagcccattctgcccatttttcagaccagagcagctgggagtcgtgtaaagcttggagttctcagctgcatcacacgtgtccttcctgttcccggagctccactcgtggacatctcgcctgcagacccggcagccagcgtcgccggaagctcatgcgcctggagaccctgggcccacccggccctgctgagtcagatggggctctaggaggactgagtcgggactgaacaaacaaggaccccgctgcaggggagcgcggcctgctcctccccagcaaacccatctctgcctcagagacgccgaacgttcgcttccagctgcgtcagctgcgctctcatccgattttcaagagcggtgatcaacacccgacagagcggaaatgctttttgttctccgaggtcctgcttttttaaacacagtggacttctctgcattgcgtttcttattaaatcatgctctctagaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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