2024-04-26 07:28:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001200793 1033 bp mRNA linear VRT 19-FEB-2023 DEFINITION Ictalurus punctatus claudin 15-like a (cldn15la), mRNA. ACCESSION NM_001200793 VERSION NM_001200793.1 KEYWORDS RefSeq. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 1033) AUTHORS Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E and Liu Z. TITLE Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote JOURNAL BMC Genomics 13, 595 (2012) PUBMED 23127152 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1033) AUTHORS Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu S, Kucuktas H, Ke C and Liu Z. TITLE Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus) JOURNAL PLoS ONE 5 (7), e11546 (2010) PUBMED 20634964 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from GU589083.1. ##Evidence-Data-START## Transcript exon combination :: GU589083.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04372580 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1033 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /chromosome="20" /map="20" gene 1..1033 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /note="claudin 15-like a" /db_xref="GeneID:100528523" exon 1..301 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="alignment:Splign:2.0.8" misc_feature 46..48 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /note="upstream in-frame stop codon" CDS 85..741 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /note="claudin 25; claudin-15" /codon_start=1 /product="claudin 15-like a precursor" /protein_id="NP_001187722.1" /db_xref="GeneID:100528523" /translation="
MSTALELTGFLLGVASWLVTGAALANDYWKVSSFSGSVIISSRQYENLWHACAEDSSGVANCRDFDSLLDLESFLQACRALMIIALILGLFSMIVSILGLKCIQVGSSSDQAKAKKAVAGGVLFILAGLCTMTAISWYAARIVEDFKNPFSGGIKFELGAGLYIGWGGACLSILGGALLSCACKDASSGQAKGGYYARSQAVKIHKPVSESETARAYV"
sig_peptide 85..159 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 91..621 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 302..466 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="alignment:Splign:2.0.8" exon 467..548 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="alignment:Splign:2.0.8" exon 549..662 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="alignment:Splign:2.0.8" exon 663..1015 /gene="cldn15la" /gene_synonym="cld15; CLDN25" /inference="alignment:Splign:2.0.8" ORIGIN
aagagaaggagaagagcgtttttaagcttgataaaggctgctctgtgatttgatttggtgttcgtgagaaaagtcagggtgaaaatgtcgacagcgttggaattgaccgggttcttgctcggtgttgcatcttggttggtaacaggcgccgctctggccaacgactactggaaagtctcgtctttctccggtagtgtcatcatctcaagccgtcagtatgagaacctgtggcacgcgtgtgccgaagacagctccggggtcgccaattgccgagacttcgactccctactggacttagaaagcttcctccaagcatgtcgggctctgatgatcatcgcccttatcttaggcctcttctctatgatcgtgtccatcctgggcctcaagtgcattcaggtcgggagctccagcgatcaagcgaaggctaagaaagccgtcgctggtggcgtcctctttatcctagcaggtctttgtacgatgacggccatctcgtggtacgccgcacgcatcgttgaagactttaaaaaccctttcagtggaggcattaaattcgagctgggggcgggactgtacataggatggggcggagcatgtctctccattctgggcggagctctgctcagctgcgcctgcaaagacgcatcttcaggacaagccaagggtggatactacgccaggagtcaagcggtaaagatccacaaacccgtgtctgagtcagagacggcaagggcttacgtttaaaccccagagatttctctgcatgtagtgttgttacttggtttttcgttttaacccacccttttttttttctacattttttttaaaaatacggggctcatgattaatgtggaatcggatttgttaatgataaaagaatattttacggatgttggatatcatgtcgttcgattactgagatttatctgtattgtgttatttgttttaaaaggcgaaggctagttgtgtggtaaacagagtttatcttgggttcaataaagttgaattgaatggaacaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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