2024-05-05 23:48:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001182961 2994 bp mRNA linear PLN 15-SEP-2023 DEFINITION Saccharomyces cerevisiae S288C Nma111p (NMA111), partial mRNA. ACCESSION NM_001182961 VERSION NM_001182961.1 DBLINK BioProject: PRJNA128 KEYWORDS RefSeq. SOURCE Saccharomyces cerevisiae S288C ORGANISM Saccharomyces cerevisiae S288C Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. REFERENCE 1 (bases 1 to 2994) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources JOURNAL Genetics 220 (4) (2022) PUBMED 34897464 REFERENCE 2 (bases 1 to 2994) AUTHORS Philippsen,P., Kleine,K., Pohlmann,R., Dusterhoft,A., Hamberg,K., Hegemann,J.H., Obermaier,B., Urrestarazu,L.A., Aert,R., Albermann,K., Altmann,R., Andre,B., Baladron,V., Ballesta,J.P., Becam,A.M., Beinhauer,J., Boskovic,J., Buitrago,M.J., Bussereau,F., Coster,F., Crouzet,M., D'Angelo,M., Dal Pero,F., De Antoni,A., Hani,J. et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications JOURNAL Nature 387 (6632 SUPPL), 93-98 (1997) PUBMED 9169873 REFERENCE 3 (bases 1 to 2994) AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 4 (bases 1 to 2994) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2994) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 6 (bases 1 to 2994) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (31-MAR-2011) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 7 (bases 1 to 2994) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (26-MAY-2010) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 8 (bases 1 to 2994) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (14-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001146). ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-4-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2994 /organism="Saccharomyces cerevisiae S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="XIV" gene <1..>2994 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /db_xref="GeneID:855600" CDS 1..2994 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:14562095|PMID:14657274]" /experiment="EXISTENCE:direct assay:GO:0008236 serine-type peptidase activity [PMID:18946088]" /experiment="EXISTENCE:mutant phenotype:GO:0004252 serine-type endopeptidase activity [PMID:29861160]" /experiment="EXISTENCE:mutant phenotype:GO:0006915 apoptotic process [PMID:14657274|PMID:16470384|PMID:16608876]" /experiment="EXISTENCE:mutant phenotype:GO:0030163 protein catabolic process [PMID:18946088]" /experiment="EXISTENCE:mutant phenotype:GO:0034605 cellular response to heat [PMID:18946088]" /experiment="EXISTENCE:mutant phenotype:GO:0044255 cellular lipid metabolic process [PMID:16470384]" /experiment="EXISTENCE:mutant phenotype:GO:0120174 stress-induced homeostatically regulated protein degradation pathway [PMID:29861160]" /experiment="EXISTENCE:physical interaction:GO:0044255 cellular lipid metabolic process [PMID:16470384]" /note="Serine protease and general molecular chaperone; cleaves Roq1p, which modifies the substrate specificity of the Ubr1p Ub-ligase, promoting the stress-induced homeostatically-regulated protein degradation (SHRED) of misfolded and native ER-membrane and cytosolic proteins; chaperone activity involved in the heat stress response; promotes apoptosis through proteolysis of Bir1p; role in lipid homeostasis; mammalian Omi/HtrA2 serine protease family member" /codon_start=1 /product="Nma111p" /protein_id="NP_014276.1" /db_xref="GeneID:855600" /db_xref="SGD:S000005067" /translation="
MTISLSNIKKRDHSKISDGTSGESSLVKRKQLESATGDQEEEYTDHEIIIEPLHFANNNNTVLTDSENYLRWQNTISNVVKSVVSIHFSQVAPFDCDSALVSEATGFVVDAKLGIILTNRHVVGPGPFVGYVVFDNHEECDVIPIYRDPVHDFGFLKFDPKNIKYSKIKALTLKPSLAKVGSEIRVVGNDAGEKLSILAGFISRIDRNAPEYGELTYNDFNTEYIQAAASASGGSSGSPVVNIDGYAVALQAGGSTEASTDFFLPLDRILRALICIQTNKPITRGTIQVQWLLKPYDECRRLGLTSERESEARAKFPENIGLLVAETVLREGPGYDKIKEGDTLISINGETISSFMQVDKIQDENVGKEIQLVIQRGGVECTVTCTVGDLHAITPHRYVEVCGATFHELSYQMARFYALPVRGVFLSSASGSFNFDSKERVGWIVDSIDNKETPDLDTFIEIMKTIPDRKRVTVRYHHLTDQHSPLVTSIYIDRHWCNEFRVYTRNDTTGIWDYKNVADPLPADALKPRSAKIIPIPVNNEKVAKLSSSLCTVATMAAVPLDSLSADILKTSGLIIDAEKGYVLVSRRVVPHDCLDTFVTIADSLVVPATVEFLHPTHNFAIVKYDPELVKAPLITPKLSTTRMKRGDKLQFIGFTQNDRIVTSETTVTDISSVSIPSNLIPRYRATNLEAISIDCNVSTRCNSGILTDNDGTVRGLWLPFLGERLENKEKVYLMGLDIMDCREVIDILKNGGKPRVSIVDAGFGSISVLQARIRGVPEEWIMRMEHESNNRLQFITVSRVSYTEDKIHLETGDVILSVNGKLVTEMNDLNGVVSSADGILPSAMLDFKVVRDGNIVDLKIKTVEVQETDRFVIFAGSILQKPHHAVLQAMVDVPKGVYCTFRGESSPALQYGISATNFITHVNEIETPDLDTFLKVVKTIPDNSYCKMRLMTFDNVPFAISLKTNYHYFPTAELKRDNITHKWIEKEFTGNSQSEK"
misc_feature 142..1173 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /note="Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265" /db_xref="CDD:223343" misc_feature 1174..1407 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /note="PDZ-like domain; Region: PDZ_1; pfam12812" /db_xref="CDD:372324" misc_feature 1627..2610 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /note="Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265" /db_xref="CDD:223343" misc_feature <2428..2586 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" misc_feature 2605..2832 /gene="NMA111" /locus_tag="YNL123W" /gene_synonym="YNM3" /note="PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117" /db_xref="CDD:444702" ORIGIN
atgaccatatcgttgagcaatataaagaaaagagaccattctaaaatttccgatggaacttctggtgaatcatcgcttgtaaaaaggaaacagttggaaagcgccaccggagatcaagaggaagaatatacagaccatgaaatcattatagagccgttgcactttgctaataataataacactgtactcacagattcagaaaattatctaagatggcaaaataccatctccaacgttgttaaatcagtggtttccattcatttttcacaagttgcgccattcgattgcgattctgctttggtatctgaagctaccggatttgtcgtggatgctaaattaggtataattctgaccaataggcacgtcgttggtcctggtccgttcgtaggctacgtagttttcgataatcatgaagaatgcgatgttataccaatttacagagatcctgttcatgattttgggttcctcaaattcgatccgaaaaacataaaatattctaagatcaaagcgttaacgctaaaaccaagtttggctaaggtcggctcagaaattagagttgtcggtaatgatgccggtgagaaattaagtatcctagcaggttttattagtagaattgacaggaacgctccagaatatggtgagctgacatacaatgacttcaatacagaatatattcaagctgctgcatctgcttctggcggttcaagtggttctccagtcgtaaatatagatgggtatgctgtggctttacaggcaggtggctctacagaggcatctactgatttttttttaccgttagatagaattcttagagcgttaatttgcatccaaaccaacaaacctatcacacgtggtacgattcaagttcaatggctgctgaagccttatgacgagtgtagaagattaggtttaacttcagagagagaaagtgaggctcgtgctaaatttcccgaaaatatcggactgttggtagcagaaaccgttttaagagaaggcccaggctatgataaaattaaagaaggtgatactctaatttcaataaacggtgaaaccatatcttctttcatgcaagtggataaaattcaagatgaaaatgttgggaaggaaatccaattggttattcaaaggggcggtgtcgaatgtactgtcacctgcactgttggtgatttacatgctatcacccctcatcgttatgtagaggtttgtggtgcgacttttcatgaattatcatatcaaatggcaaggttttatgcgctacctgtcaggggtgtatttttaagtagtgcatcagggtctttcaactttgattcaaaagaaagagtgggttggattgtggattctatagacaataaggaaacccccgacttagatacatttattgaaattatgaaaactattccagatcgtaagcgcgttactgtacgataccaccatctaacagatcagcattctccacttgttacttctatttacattgaccgtcattggtgcaatgaattcagagtttacacaaggaacgatacaactggtatttgggattacaaaaatgttgctgatccacttccagccgatgcgttgaaacctcgttcggccaaaattattcctattcctgttaataatgaaaaagttgcaaaattgtcatcatcgttatgtacagtggctacaatggcagcagttccattggattcactttctgctgatattttaaaaacatcaggcttaatcattgatgctgaaaaaggttatgtcctagtgtccagaagggtagttccacatgattgtcttgatacttttgtcaccattgcagattcccttgtagttccagccacagtagaatttctccatccaactcacaacttcgctattgttaaatatgatccagagttagtaaaggctccactaatcactcccaagctatctaccaccagaatgaaacgtggtgataagcttcagtttataggttttacccagaatgatagaattgttacttcagagaccactgtcaccgatatttcctctgtaagtattccaagtaatttaattccgaggtaccgtgccactaatttagaagctatatctatcgactgcaacgttagcaccagatgtaattccggtattttgacagataatgatggtacagtaagaggtttatggcttccatttttaggcgaaagattagaaaataaagaaaaggtttatttgatgggattagatataatggactgtagggaagttatagatatcttaaaaaatggcggtaaaccaagagtaagtatagttgatgctgggttcggttcaatttccgttctgcaagccagaattagaggtgtgcccgaagaatggatcatgcgtatggaacatgaatcaaataacaggctacagtttatcactgtttctagagtttcttatacagaagacaagattcatttagagaccggtgacgtcattttatctgtgaacggaaaattagtcactgaaatgaatgatttgaatggagttgtaagctcagctgatggtattttgccatcagccatgttagattttaaagttgttcgtgatggtaatattgttgatttgaaaattaaaaccgtggaagttcaggaaaccgaccgttttgtaatatttgcaggtagtatcttacaaaagccgcatcatgctgttttgcaagctatggttgatgttccaaagggtgtctactgtacattcaggggagaatcgtcaccggcgctccagtacggtatatctgccacaaacttcataactcatgtcaatgaaattgaaacacctgatctagatacatttttgaaagttgtcaaaacaatccctgataatagttattgtaaaatgaggttaatgactttcgacaatgtgcccttcgctatttcactgaaaacgaattatcattacttccctactgcagaattgaagagggacaacatcacgcacaaatggattgaaaaggaatttaccggcaacagccaaagtgaaaaatag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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