2024-05-06 02:49:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001181666 999 bp mRNA linear PLN 15-SEP-2023 DEFINITION Saccharomyces cerevisiae S288C glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH2 (TDH2), partial mRNA. ACCESSION NM_001181666 VERSION NM_001181666.1 DBLINK BioProject: PRJNA128 KEYWORDS RefSeq. SOURCE Saccharomyces cerevisiae S288C ORGANISM Saccharomyces cerevisiae S288C Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. REFERENCE 1 (bases 1 to 999) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources JOURNAL Genetics 220 (4) (2022) PUBMED 34897464 REFERENCE 2 (bases 1 to 999) AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 3 (bases 1 to 999) AUTHORS Galibert,F., Alexandraki,D., Baur,A., Boles,E., Chalwatzis,N., Chuat,J.C., Coster,F., Cziepluch,C., De Haan,M., Domdey,H., Durand,P., Entian,K.D., Gatius,M., Goffeau,A., Grivell,L.A., Hennemann,A., Herbert,C.J., Heumann,K., Hilger,F., Hollenberg,C.P., Huang,M.E., Jacq,C., Jauniaux,J.C., Katsoulou,C., Karpfinger-Hartl,L. et al. TITLE Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X JOURNAL EMBO J. 15 (9), 2031-2049 (1996) PUBMED 8641269 REFERENCE 4 (bases 1 to 999) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 999) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 6 (bases 1 to 999) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (12-APR-2011) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 7 (bases 1 to 999) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (14-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001142). ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-4-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..999 /organism="Saccharomyces cerevisiae S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="X" gene <1..>999 /gene="TDH2" /locus_tag="YJR009C" /gene_synonym="GLD2" /db_xref="GeneID:853465" CDS 1..999 /gene="TDH2" /locus_tag="YJR009C" /gene_synonym="GLD2" /EC_number="1.2.1.12" /experiment="EXISTENCE:direct assay:GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [PMID:3905788]" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:26928762]" /experiment="EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:11914276]" /experiment="EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16962558]" /experiment="EXISTENCE:direct assay:GO:0005811 lipid droplet [PMID:10515935]" /experiment="EXISTENCE:direct assay:GO:0005829 cytosol [PMID:11158358|PMID:26928762]" /experiment="EXISTENCE:direct assay:GO:0005886 plasma membrane [PMID:16622836]" /experiment="EXISTENCE:direct assay:GO:0009277 fungal-type cell wall [PMID:11158358]" /experiment="EXISTENCE:direct assay:GO:1904408 melatonin binding [PMID:31708896]" /experiment="EXISTENCE:direct assay:GO:1990841 promoter-specific chromatin binding [PMID:27184763]" /experiment="EXISTENCE:expression pattern:GO:0006094 gluconeogenesis [PMID:3905788]" /experiment="EXISTENCE:expression pattern:GO:0006096 glycolytic process [PMID:3905788]" /experiment="EXISTENCE:mutant phenotype:GO:0006915 apoptotic process [PMID:17726063]" /experiment="EXISTENCE:mutant phenotype:GO:0072593 reactive oxygen species metabolic process [PMID:17726063]" /note="Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2; involved in glycolysis and gluconeogenesis; tetramer that catalyzes reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in cytoplasm and cell wall; protein abundance increases in response to DNA replication stress; GAPDH-derived antimicrobial peptides are active against a wide variety of wine-related yeasts and bateria; TDH2 has a paralog, TDH3, that arose from the whole genome duplication" /codon_start=1 /product="glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH2" /protein_id="NP_012542.1" /db_xref="GeneID:853465" /db_xref="SGD:S000003769" /translation="
MVRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGEVSHDDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAKA"
misc_feature <4..990 /gene="TDH2" /locus_tag="YJR009C" /gene_synonym="GLD2" /note="glyceraldehyde-3-phosphate dehydrogenase; Region: PLN02272" /db_xref="CDD:177912" ORIGIN
atggttagagttgctattaacggtttcggtagaatcggtagattggttatgagaattgctttgcaaagaaagaacgtcgaagttgttgctttgaacgatcctttcatctctaacgactactccgcttacatgttcaagtacgactctactcacggtagatacgctggtgaagtttcccacgatgacaagcacatcatcgttgatggtcacaagatcgccactttccaagaaagagacccagctaacttgccatgggcttctctaaacattgacatcgccattgactccactggtgttttcaaggaattggacactgctcaaaagcacattgacgctggtgccaagaaggttgtcatcactgctccatcttccaccgccccaatgttcgtcatgggtgttaacgaagaaaaatacacttctgacttgaagattgtttccaacgcttcttgtaccaccaactgtttggctccattggccaaggttatcaacgatgctttcggtattgaagaaggtttgatgaccactgttcactccatgaccgccacccaaaagactgttgacggtccatcccacaaggactggagaggtggtagaaccgcttccggtaacatcatcccatcctctaccggtgctgctaaggctgtcggtaaggtcttgccagaattgcaaggtaagttgaccggtatggctttcagagtcccaaccgtcgatgtttccgttgttgacttgactgtcaagttgaacaaggaaaccacctacgatgaaatcaagaaggttgtcaaggctgccgctgaaggtaagttgaagggtgtcttgggttacactgaagacgctgttgtctcctctgacttcttgggtgactctaactcttccatcttcgatgctgccgctggtatccaattgtctccaaagttcgtcaagttggtttcctggtacgacaacgaatacggttactctaccagagttgtcgacttggttgaacacgttgccaaggcttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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