2024-05-06 03:40:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001181641 990 bp mRNA linear PLN 15-SEP-2023 DEFINITION Saccharomyces cerevisiae S288C ribonuclease (NUC1), partial mRNA. ACCESSION NM_001181641 VERSION NM_001181641.1 DBLINK BioProject: PRJNA128 KEYWORDS RefSeq. SOURCE Saccharomyces cerevisiae S288C ORGANISM Saccharomyces cerevisiae S288C Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. REFERENCE 1 (bases 1 to 990) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources JOURNAL Genetics 220 (4) (2022) PUBMED 34897464 REFERENCE 2 (bases 1 to 990) AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 3 (bases 1 to 990) AUTHORS Galibert,F., Alexandraki,D., Baur,A., Boles,E., Chalwatzis,N., Chuat,J.C., Coster,F., Cziepluch,C., De Haan,M., Domdey,H., Durand,P., Entian,K.D., Gatius,M., Goffeau,A., Grivell,L.A., Hennemann,A., Herbert,C.J., Heumann,K., Hilger,F., Hollenberg,C.P., Huang,M.E., Jacq,C., Jauniaux,J.C., Katsoulou,C., Karpfinger-Hartl,L. et al. TITLE Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X JOURNAL EMBO J. 15 (9), 2031-2049 (1996) PUBMED 8641269 REFERENCE 4 (bases 1 to 990) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 990) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 6 (bases 1 to 990) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (12-APR-2011) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 7 (bases 1 to 990) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (14-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001142). ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-4-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..990 /organism="Saccharomyces cerevisiae S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="X" gene <1..>990 /gene="NUC1" /locus_tag="YJL208C" /db_xref="GeneID:853222" CDS 1..990 /gene="NUC1" /locus_tag="YJL208C" /experiment="EXISTENCE:direct assay:GO:0004520 DNA endonuclease activity [PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0004529 DNA exonuclease activity [PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0004540 RNA nuclease activity [PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:17244531]" /experiment="EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:16823961|PMID:24769239]" /experiment="EXISTENCE:direct assay:GO:0005743 mitochondrial inner membrane [PMID:17244531|PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0005829 cytosol [PMID:31266891]" /experiment="EXISTENCE:direct assay:GO:0006308 DNA catabolic process [PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0006401 RNA catabolic process [PMID:3286639]" /experiment="EXISTENCE:direct assay:GO:0051607 defense response to virus [PMID:31266891]" /experiment="EXISTENCE:mutant phenotype:GO:0006309 apoptotic DNA fragmentation [PMID:22727375]" /experiment="EXISTENCE:mutant phenotype:GO:0006310 DNA recombination [PMID:8087883]" /experiment="EXISTENCE:mutant phenotype:GO:0006915 apoptotic process [PMID:17244531]" /note="Ski complex component and TPR protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; role in preventing L-A mycovirus pathogenesis; mutations in the human ortholog, TTC37, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome" /codon_start=1 /product="ribonuclease" /protein_id="NP_012327.1" /db_xref="GeneID:853222" /db_xref="SGD:S000003744" /translation="
MCSRILLSGLVGLGAGTGLTYLLLNKHSPTQIIETPYPPTQKPNSNIQSHSFNVDPSGFFKYGFPGPIHDLQNREEFISCYNRQTQNPYWVLEHITPESLAARNADRKNSFFKEDEVIPEKFRGKLRDYFRSGYDRGHQAPAADAKFSQQAMDDTFYLSNMCPQVGEGFNRDYWAHLEYFCRGLTKKYKSVRIVTGPLYLPKKDPIDNKFRVNYEVIGNPPSIAVPTHFFKLIVAEAPTANPAREDIAVAAFVLPNEPISNETKLTDFEVPIDALERSTGLELLQKVPPSKKKALCKEVNCQIVVRDFSNAAIKQSKDVKLLPPPKKRN"
misc_feature 22..924 /gene="NUC1" /locus_tag="YJL208C" /note="DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]; Region: NUC1; COG1864" /db_xref="CDD:224777" ORIGIN
atgtgcagtaggatactcttgtccggtttagtcggactgggtgctggtactggcttaacctatcttcttttgaacaaacattctccaacgcaaatcattgagacaccttatccacctacccagaaacctaatagtaatattcaatctcactctttcaacgtcgatccttccgggttcttcaagtatggttttcctggtccgattcatgatctgcagaaccgcgaagagtttatctcatgttacaacagacaaactcaaaatccttattgggtcctcgaacatataacgccagaatcattggctgcaaggaatgctgacagaaaaaattcctttttcaaggaagatgaagtaattccagaaaagtttagaggtaaactaagagactattttaggtcgggctatgatcgaggccatcaagccccagctgcagacgcaaaattttctcaacaggccatggatgatacattctacttatccaatatgtgtcctcaagtaggagaaggttttaatagagactattgggcgcatttggagtacttttgtaggggattgactaagaaatataagagtgtaagaatcgtgactggtccattgtatctacccaaaaaggatcccatagataataaatttagggttaattatgaagttattggcaatccacccagtattgctgttccaacgcacttttttaaattgattgttgcagaagcaccaacagccaatcctgctagagaggatattgctgtcgcggcatttgtattgccaaacgaaccgatatcaaatgagacgaaattgactgactttgaagttcctatagatgctttagagagaagtactgggctagaacttctgcaaaaagtaccaccttcaaagaagaaggcattatgcaaagaggtaaattgtcaaattgtagtgagagatttctctaacgcggcgatcaaacaatcgaaagatgtgaaattgttacctcctccaaaaaaaaggaattga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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