2024-05-05 20:36:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001181227 4893 bp mRNA linear PLN 15-SEP-2023 DEFINITION Saccharomyces cerevisiae S288C separase (ESP1), partial mRNA. ACCESSION NM_001181227 VERSION NM_001181227.3 DBLINK BioProject: PRJNA128 KEYWORDS RefSeq. SOURCE Saccharomyces cerevisiae S288C ORGANISM Saccharomyces cerevisiae S288C Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. REFERENCE 1 (bases 1 to 4893) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources JOURNAL Genetics 220 (4) (2022) PUBMED 34897464 REFERENCE 2 (bases 1 to 4893) AUTHORS Tettelin,H., Agostoni Carbone,M.L., Albermann,K., Albers,M., Arroyo,J., Backes,U., Barreiros,T., Bertani,I., Bjourson,A.J., Bruckner,M., Bruschi,C.V., Carignani,G., Castagnoli,L., Cerdan,E., Clemente,M.L., Coblenz,A., Coglievina,M., Coissac,E., Defoor,E., Del Bino,S., Delius,H., Delneri,D., de Wergifosse,P., Dujon,B., Kleine,K. et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome VII JOURNAL Nature 387 (6632 SUPPL), 81-84 (1997) PUBMED 9169869 REFERENCE 3 (bases 1 to 4893) AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 4 (bases 1 to 4893) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 4893) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (16-JAN-2015) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 6 (bases 1 to 4893) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 7 (bases 1 to 4893) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (31-MAR-2011) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 8 (bases 1 to 4893) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001139). On Jul 30, 2012 this sequence version replaced NM_001181227.2. ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-4-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4893 /organism="Saccharomyces cerevisiae S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="VII" gene <1..>4893 /gene="ESP1" /locus_tag="YGR098C" /db_xref="GeneID:852990" CDS 1..4893 /gene="ESP1" /locus_tag="YGR098C" /EC_number="3.4.22.49" /experiment="EXISTENCE:direct assay:GO:0004197 cysteine-type endopeptidase activity [PMID:11081626|PMID:11081625]" /experiment="EXISTENCE:direct assay:GO:0005634 nucleus [PMID:11149918|PMID:22842922]" /experiment="EXISTENCE:direct assay:GO:0005737 cytoplasm [PMID:11149918|PMID:22842922]" /experiment="EXISTENCE:direct assay:GO:0005739 mitochondrion [PMID:14576278|PMID:16823961]" /experiment="EXISTENCE:direct assay:GO:0005819 spindle [PMID:11149918]" /experiment="EXISTENCE:genetic interaction:GO:0031536 positive regulation of exit from mitosis [PMID:14551257]" /experiment="EXISTENCE:genetic interaction:GO:0032888 regulation of mitotic spindle elongation [PMID:18430955]" /experiment="EXISTENCE:mutant phenotype:GO:0000070 mitotic sister chromatid segregation [PMID:9635435]" /experiment="EXISTENCE:mutant phenotype:GO:0004197 cysteine-type endopeptidase activity [PMID:11081626]" /experiment="EXISTENCE:mutant phenotype:GO:0006915 apoptotic process [PMID:18321989]" /experiment="EXISTENCE:mutant phenotype:GO:0031536 positive regulation of exit from mitosis [PMID:27418100|PMID:14551257]" /experiment="EXISTENCE:mutant phenotype:GO:0032888 regulation of mitotic spindle elongation [PMID:18430955]" /experiment="EXISTENCE:mutant phenotype:GO:0035308 negative regulation of protein dephosphorylation [PMID:16713564]" /experiment="EXISTENCE:mutant phenotype:GO:1904750 negative regulation of protein localization to nucleolus [PMID:14551257]" /experiment="EXISTENCE:physical interaction:GO:0035308 negative regulation of protein dephosphorylation [PMID:16713564]" /note="Separase/separin, a caspase-like cysteine protease; cleaves Mcd1p/Scc1p, a mitotic cohesin complex subunit, resulting in the dissociation of cohesin from chromatin and sister chromatid separation; cleaves meiotic-cohesin subunit Rec8p along chromosome arms in meiosis I and at centromeric sites during meiosis II; inhibits PP2A-Cdc55p to promote mitotic exit; inhibited by Pds1p (securin); relative distribution to the nucleus increases upon DNA replication stress" /codon_start=1 /product="separase" /protein_id="NP_011612.3" /db_xref="GeneID:852990" /db_xref="SGD:S000003330" /translation="
MMVKQEEPLNEISPNTPMTSKSYLLNDTLSKVHHSGQTRPLTSVLSGDASSNSIGILAMHNNIIRDFTKIASNNIDLAIEDITTVDHSLNSIYSLLKSHHMWGHINSTVKQHLMIIVKLINNNALGLASSEIIFLFNETNLFQAHSLKNILLADFSTWNDYYLSNLKILALQIILKRKLVDEYLPHILELFSHDKRYLLKDPNLKAHALTKIVLSFFSVTTSCKVLFGLKFLQYIKQFKLPFKKFISNITVECFSKNLLHKNYLEMGPNKIYLNSFYLSYSMLYDGLDKIMLLDILSYEETTEVQRAIKSKKEFNEYCNMSENRLLWSCISVDDLNVILENATNFLQNKGKHISATLKCLVCLWSTIRLEGLPKNKDILRQFDCTVIYINSNIKSINDESAAALLSELLGVLSEICIDYKEPKRLSNIISVLFNASVLFKSHSFLLKTANLEISNVLISNDSKTSHRTILKFEKFISSAQSAQKKIEIFSCLFNVYCMLRNDTLSFVFDFCQNAFIHCFTRLKITKFIEFSNSSEIMLSVLYGNSSIENIPSENWSQLSRMIFCSLRGIFDLDPLELNNTFDKLHLLNKYELLIRIVYLLNLDMSKHLTTNLSKITKLYINKWLQKSDEKAERISSFEMDFVKMLLCYLNFNNFDKLSIELSLCIKSKEKYYSSIVPYADNYLLEAYLSLYMIDDALMMKNQLQKTMNLSTAKIEQALLHASSLINVHLWDSDLTAFQIYFGKTLPAMKPELFDINNDHNLPMSLYIKVILLNIKIFNESAKLNIKAGNVISAVIDCRKAQNLALSLLKKKNKLSQGSRLALLKSLSFSFFQLIKIHIRIGSARDCEFYSKELSRIISDLEEPIIVYRCLHFLHRYYMITEQTCLQNITLGKANKAFDYLDAEADITSLTMFLYDNKEFVKLEQSLVLYFGDQLEKTFLPNLWKLHLGKDIDDSICLSEYMPKNVINRVHNMWQKVMSQLEEDPFFKGMFESTLGIPSSLPVIPSTMPNNILKTPSKHSTGLKLCDSPRSSSMTPRGKNIRQKFDRIAAISKLKQMKELLESLKLDTLDNHELSKISSLSSLTLTILSNITSIHNAESSLITNFSLTDLPRHMPLLFDKVLNNIDNKNYREFRVSSLIAPNNISTITESIRVSAAQKDLMESNLNINVITIDFCPITGNLLLSKLEPRRKRRTHLRLPLIRSNSRDLDEVHLSFPEATKKLLSIINESNQTTSVEVTNKIKTREERKSWWTTRYDLDKRMQQLLNNIENSWFNGVQGFFSPEVVDNSLFEKFKDKFYEILHQNLPSRKLYGNPAMFIKVEDWVIELFLKLNPQEIDFLSKMEDLIYFVLDILLFHGEENAYDEIDFSMLHVQLEEQIKKYRATMTTNSIFHTFLVVSSSCHLFPWECLSFLKDLSITRVPSYVCLNKLLSRFHYQLPLQVTIEDNISMILNPNGDLSRTESKFKGMFQKIIDAKPSSQLVMNEKPEEETLLKMLQNSNLFVYIGHGGGEQYVRSKEIKKCTKIAPSFLLGCSSAAMKYYGKLEPTGTIYTYLLGGCPMVLGNLWDVTDKDIDKFSEELFEKMGFRCNTDDLNGNSLSVSYAVSKSRGVCHLRYLNGAAPVIYGLPIKFVS"
misc_feature 1..4890 /gene="ESP1" /locus_tag="YGR098C" /note="Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]; Region: ESP1; COG5155" /db_xref="CDD:227484" ORIGIN
atgatggtaaaacaggaggaaccgctgaatgagattagtccgaatactccgatgactagcaagtcctaccttttaaacgacacgctttcgaaagtacatcatagtggccaaactagaccactgacctcggtgttgtctggagacgcctcatccaattctattggcatactagcaatgcataataacataatacgtgactttacaaaaattgcaagcaataacatagacttagccattgaggatattaccactgttgaccattcattaaattcaatatatagcctattgaagagccatcacatgtggggccatataaactccactgttaaacaacatttgatgataattgttaaactaataaataataacgcattaggattggcctcctctgaaattatttttcttttcaatgaaacgaatttatttcaagctcatagtctgaaaaacattcttctagcagacttcagtacgtggaacgactactatctttcaaatctgaaaatattagcgctgcagattatactgaaaagaaagctagtagacgaatacttaccgcatatattagaactattttcccatgataaaagatatcttttgaaagaccctaacctcaaagctcacgctctcacaaaaatcgtgctgagctttttttctgtcacgacgagttgcaaagttctattcgggctaaaatttctacaatatatcaaacagttcaaattaccttttaaaaagttcattagcaacattaccgtcgagtgttttagcaaaaaccttcttcataaaaattatttggagatgggacctaataaaatatatttaaattcattttacttatcctattccatgctgtacgatggattggataaaataatgcttctagacattttaagttacgaagaaactactgaggtacaaagagcgataaaaagtaaaaaagaattcaatgaatactgcaacatgagtgaaaaccgtcttctctggtcctgtatatctgtcgatgatttgaacgtaatactcgaaaatgcaacgaattttctacaaaataaagggaaacatatatccgcaacattaaaatgtttagtctgtctttggtctactattcgcctagagggattacctaaaaataaggatatattgaggcagtttgattgtactgttatttatatcaactcaaatattaaatccattaatgacgaatctgcggcggcattattatccgaacttctgggagttttatcagaaatttgtatcgattataaagagcctaaacgactgtcaaatattatcagtgtccttttcaatgcttctgttttatttaagagtcattcgtttttgttaaagactgctaatttggaaatctcaaatgttttaatcagtaatgattcaaaaacatctcatcgtactatactgaaatttgaaaaatttatatctagtgctcagagtgcccagaaaaaaattgaaatcttttcctgtttgttcaatgtatattgcatgctacgaaatgatacgctatcatttgtttttgacttttgccaaaatgcattcattcattgctttacacgcctaaaaatcacaaaattcatcgagttttcaaacagttcagaaattatgctttcagtactgtatggaaattcatctatcgaaaacattccttccgaaaattggtcacaactaagcagaatgatattttgctcactgaggggtatctttgatttggatcctttagagctaaataatacgtttgataaattacacttgctcaacaaatatgagctattaatacgaatagtgtacctattgaacctggacatgagtaaacacctgacaacgaatctatcgaaaataactaagctgtacataaacaaatggctacaaaaatcagatgaaaaggccgagagaatatcgtcatttgaaatggacttcgttaaaatgctattgtgctacttgaactttaataattttgataagttatccattgaactttcactctgtattaaatcaaaagaaaagtattactccagtattgtgccttatgccgacaattatttgctagaggcttatctgagcttatatatgattgatgatgccctcatgatgaagaatcaactacaaaaaacaatgaatttatcaacggcgaaaatagagcaggcgttattacatgcaagttctttaataaatgtccacttgtgggactctgacttgacagcgtttcaaatatattttggaaaaacactgcctgctatgaagcctgaattatttgatatcaataacgaccacaacctacccatgtcactttacatcaaagtcatacttttgaacataaaaatttttaatgaaagcgcgaaattaaatattaaagctggtaatgttatatccgcagtaattgattgtagaaaagcacaaaatttagcattatcgttgctcaaaaagaagaacaaattgtcacaaggatccaggctagcattactaaaaagtctatcgtttagttttttccaactcattaaaatacatatacgcattggttctgccagagactgtgagttctacagtaaagaactgtctagaattatttctgacttagaggaacctattatcgtctacagatgtctgcattttcttcacagatactatatgattacagagcaaacctgtcttcaaaatataactttgggaaaagccaataaggcatttgattatcttgatgctgaggcagacattacaagtttgacaatgtttctgtatgataataaggaatttgtaaagttagagcagtcgttggtcctatatttcggtgaccagctagaaaaaacattcctacctaatttgtggaagcttcacttgggtaaggatattgacgacagcatttgtctgtccgaatatatgcccaaaaatgtaatcaatagagtacacaatatgtggcaaaaagtaatgagccaattggaggaagatcctttcttcaaaggtatgtttgaatctacccttgggattccctcttctctgcctgttattcctagcacgatgcccaacaacattttaaaaactccttccaagcatagtacaggattgaagctttgcgattcaccaagatcgtcgagcatgacgcctagaggtaagaatataagacagaaatttgatagaattgctgctattagtaaattaaaacagatgaaagaacttttggagagtttgaaactagacacattagataatcacgaactgtccaaaatttcctccctttcttcattaactctgactatcctttcaaacataactagtatccataatgctgagagtagtttgataactaatttttcgctaactgacttgccaaggcatatgcctttgttattcgataaggtattgaataatattgataataaaaattaccgagaatttcgcgtttcatcactaatagctccgaacaatatatccacaattacagagagtattagagtatctgccgcccagaaggacttaatggagagcaaccttaatattaatgttataactattgacttctgtcccataactggaaatttacttctatccaaattagaaccgcgacgtaagagaaggacgcatttaaggctaccgctaatacgatctaattcaagagacctcgacgaagttcatctctcatttccggaggctacaaaaaaactactttctattatcaatgaaagcaaccaaacgacgtcagtggaagttaccaacaagattaaaacaagagaagaaagaaaatcttggtggaccacaagatatgatttggataaaagaatgcaacaattgttgaataacattgaaaatagttggttcaatggcgttcaagggttttttagccctgaagtagtcgacaactcgttatttgaaaaatttaaagataaattttacgaaattctgcatcaaaatcttccttccagaaaactctatggcaatccggcaatgtttataaaagttgaagattgggtaatcgaattgttcttgaaacttaatccgcaagaaatcgattttctttcgaagatggaagacctgatatactttgttcttgatattcttctcttccatggtgaagaaaatgcttacgacgaaattgatttcagcatgcttcacgtgcagttagaagagcaaataaagaaatatagggcaactatgacaactaatagtatatttcatacatttttagtcgttagcagttcatgccatttattcccttgggagtgtctttcatttttgaaagatttgtctatcacacgtgttccgtcctatgtttgtctgaataaacttttatcgcgtttccattaccaactaccccttcaagtaactattgaggacaacattagtatgatattaaatccgaacggagatttgtccaggactgaatctaaattcaagggtatgttccaaaaaataatcgatgcaaaaccttcctctcaattagtgatgaacgagaagccggaagaggaaacacttttgaaaatgctgcaaaattctaacttattcgtttatatagggcatggcggaggtgaacaatatgtaaggagtaaggagattaagaaatgcaccaaaattgcccccagctttttactgggctgctcttcagcagcgatgaaatattacggcaagttagaacctactggaacaatctatacttatttgctgggaggatgccctatggtactaggtaatctgtgggatgtaactgacaaagatattgataaatttagcgaggaactttttgaaaagatgggatttcgctgtaatactgacgatttgaatggtaatagcctatctgtttcatatgccgtctctaaatctagaggtgtatgccatctacgttacttgaacggcgcagctcctgttatttatgggttaccgatcaagttcgtatcataa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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