2024-05-06 04:19:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001181025 1713 bp mRNA linear PLN 15-SEP-2023 DEFINITION Saccharomyces cerevisiae S288C putative metalloreductase (AIM14), partial mRNA. ACCESSION NM_001181025 VERSION NM_001181025.1 DBLINK BioProject: PRJNA128 KEYWORDS RefSeq. SOURCE Saccharomyces cerevisiae S288C ORGANISM Saccharomyces cerevisiae S288C Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. REFERENCE 1 (bases 1 to 1713) AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M., Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S., Weng,S. and Cherry,J.M. TITLE New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources JOURNAL Genetics 220 (4) (2022) PUBMED 34897464 REFERENCE 2 (bases 1 to 1713) AUTHORS Tettelin,H., Agostoni Carbone,M.L., Albermann,K., Albers,M., Arroyo,J., Backes,U., Barreiros,T., Bertani,I., Bjourson,A.J., Bruckner,M., Bruschi,C.V., Carignani,G., Castagnoli,L., Cerdan,E., Clemente,M.L., Coblenz,A., Coglievina,M., Coissac,E., Defoor,E., Del Bino,S., Delius,H., Delneri,D., de Wergifosse,P., Dujon,B., Kleine,K. et al. TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome VII JOURNAL Nature 387 (6632 SUPPL), 81-84 (1997) PUBMED 9169869 REFERENCE 3 (bases 1 to 1713) AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B., Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M., Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and Oliver,S.G. TITLE Life with 6000 genes JOURNAL Science 274 (5287), 546 (1996) PUBMED 8849441 REFERENCE 4 (bases 1 to 1713) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-SEP-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1713) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (16-JAN-2015) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 6 (bases 1 to 1713) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Protein update by submitter REFERENCE 7 (bases 1 to 1713) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (31-MAR-2011) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA REMARK Sequence update by submitter REFERENCE 8 (bases 1 to 1713) CONSRTM Saccharomyces Genome Database TITLE Direct Submission JOURNAL Submitted (11-DEC-2009) Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record is derived from an annotated genomic sequence (NC_001139). ##Genome-Annotation-Data-START## Annotation Provider :: SGD Annotation Status :: Full Annotation Annotation Version :: R64-4-1 URL :: http://www.yeastgenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1713 /organism="Saccharomyces cerevisiae S288C" /mol_type="mRNA" /strain="S288C" /db_xref="taxon:559292" /chromosome="VII" gene <1..>1713 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /db_xref="GeneID:852716" CDS 1..1713 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /experiment="EXISTENCE:direct assay:GO:0005783 endoplasmic reticulum [PMID:26928762]" /experiment="EXISTENCE:direct assay:GO:0097038 perinuclear endoplasmic reticulum [PMID:22586098]" /experiment="EXISTENCE:genetic interaction:GO:0006915 apoptotic process [PMID:22586098]" /experiment="EXISTENCE:mutant phenotype:GO:0016175 superoxide-generating NAD(P)H oxidase activity [PMID:22586098]" /experiment="EXISTENCE:mutant phenotype:GO:0032956 regulation of actin cytoskeleton organization [PMID:22586098]" /note="NADPH oxidase localized to the perinuclear ER; produces superoxide from NADPH; overexpression causes MCA1 dependent apoptosis; likely involved in superoxide-mediated regulation of the actin cytoskeleton; member of a conserved superfamily of NADPH oxidases (NOX enzymes); has similarity to iron/copper reductases (FRE1-8), particularly Fre8p" /codon_start=1 /product="putative metalloreductase" /protein_id="NP_011355.1" /db_xref="GeneID:852716" /db_xref="SGD:S000003128" /translation="
MKESPLITLVKRHSETHFANIKYGYYVLIISLVYLIGLALLRAFGRRTPSRSSSAFKNKIIYRLYDIDPAIHLGILFFAVLIPFYYHYSLTTQSTVYLKRLGRLSYALIPLNLFLTLRPNWFLRKNCTYTDFIPFHKWFSRIITVIGLLHGIFFIIKWAIDDNVSLKQKLILKTFNFAGFIISILVLFLLICSIGPMRRYNYRLFYIVHNLVNVAFILLTPIHSRPGVKFPFLLLNCTLLFIHIINRIVFAKSLMILNKNANYSKTNLVHVRLPRAILPDYFEPGSHIRISPYRRINPLYWLLPSHPYTIASLAEDNSIDLIIKETSTAEPGSQIESLRSNPKSFHLDQEKTYTLINSYPPSVPEECYSQGTNIAIICGGSGISFALPLFRHFFNKENVKYLKMIWLIKDYSEYELVLDYLKTNGLTFEKKLSNNKRISVFISGEYTAETRLDEITTNIDDENSEYEMGSFNNEDEDLSISNFNSENADSNDNTPETSHSPTKENGSMIEVKSKHSFTLSNELKSFNNESAQVNQNETWLFSCGPPSLLQLSKKYCNDERINFVCETYGL"
misc_feature 301..660 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="Ferric reductase like transmembrane component; Region: Ferric_reduct; pfam01794" /db_xref="CDD:426438" misc_feature 757..1095 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="FAD-binding domain; Region: FAD_binding_8; pfam08022" /db_xref="CDD:285293" misc_feature order(859..861,916..927,964..972,982..987,1141..1143) /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99783" misc_feature order(916..918,922..927) /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99783" misc_feature 1114..1668 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="Ferric reductase NAD binding domain; Region: NAD_binding_6; pfam08030" /db_xref="CDD:429792" misc_feature 1126..1158 /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="NAD pyrophosphate binding region [chemical binding]; other site" /db_xref="CDD:99783" misc_feature order(1126..1128,1138..1149,1153..1155) /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="beta-alpha-beta stucture motif; other site" /db_xref="CDD:99783" misc_feature order(1213..1218,1225..1227) /gene="AIM14" /locus_tag="YGL160W" /gene_synonym="YNO1" /note="NADP ribose binding motif [chemical binding]; other site" /db_xref="CDD:99783" ORIGIN
atgaaagaatcccctctcataacgttggttaaaagacattccgagacacattttgccaatatcaagtatgggtattatgtgttgataatatcattggtctatctcattggattggctcttttgagagctttcggaaggagaaccccatccagatcgtcgtcagctttcaaaaataagataatttatcggttgtatgatatagatcctgcaattcacttaggtatattgttttttgcagtcttgattccattttattaccattactctttgactacccaatctacggtctatctcaaaagattagggaggttgagttacgccttgatcccgctgaacctattcctcactttaaggcctaattggttccttaggaaaaattgcacctacactgattttataccgttccataaatggttttcacgtattatcaccgtgattggtttgcttcatgggattttcttcatcattaagtgggcgatagacgataatgtctctctaaagcaaaaattgattctgaaaactttcaattttgcgggattcataatatcaatattggtactttttttacttatttgctcgattgggccaatgagaagatacaactatcgtttgttttacatcgtacataacctggtgaacgtggccttcatcttactcaccccaatacactctaggccaggtgttaagttcccatttcttctactaaactgtaccctattattcattcatattatcaatagaatagtatttgcgaaatccttgatgattttgaataagaatgcgaattattcaaaaacaaatttagtccatgtaagattgcccagggctattcttccagattattttgaaccagggtcgcatattagaataagcccttacagaagaattaatcccctctattggttgctaccatcgcatccatacacaattgcgtctttggcagaagacaattcaattgatcttattataaaggaaacctctacagccgagccaggtagccagatagagtctcttcgtagtaatccaaaatcctttcatttagatcaagaaaaaacctatactttgattaatagttatcctccctctgtacccgaagaatgttattctcaaggcacgaatatagctattatatgtggtgggtctggtatatcttttgccctaccactatttaggcatttttttaacaaggagaatgtaaaatacttgaaaatgatctggctgataaaagattactctgaatatgaacttgttttggattatctcaagacaaatgggttgacttttgagaaaaaactctcgaataataagaggatttcagtatttattagtggagaatacacggcggaaacacggttagacgaaattacgaccaatatcgacgatgaaaactcagaatatgaaatgggatctttcaacaatgaagacgaagacctttcgatttctaatttcaattcagaaaatgcggacagcaatgacaatacgccagagacaagtcatagccccacaaaagagaatggaagcatgatcgaggtaaaatccaaacacagttttactctttccaacgaattgaagagcttcaacaatgaaagtgcacaagtgaaccaaaatgaaacatggttgttttcatgtggtcctccctcgttattacaattgtctaaaaaatattgtaacgatgaaaggatcaactttgtctgtgagacttacggattatga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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