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Previous release (v1)
2025-07-13 15:34:18, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NM_001169115 4470 bp mRNA linear ROD 01-APR-2024
DEFINITION Rattus norvegicus trafficking protein particle complex subunit 11
(Trappc11), mRNA.
ACCESSION NM_001169115 XM_001059837 XM_224848
VERSION NM_001169115.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4470)
AUTHORS Matalonga,L., Bravo,M., Serra-Peinado,C., Garcia-Pelegri,E.,
Ugarteburu,O., Vidal,S., Llambrich,M., Quintana,E.,
Fuster-Jorge,P., Gonzalez-Bravo,M.N., Beltran,S., Dopazo,J.,
Garcia-Garcia,F., Foulquier,F., Matthijs,G., Mills,P., Ribes,A.,
Egea,G., Briones,P., Tort,F. and Giros,M.
TITLE Mutations in TRAPPC11 are associated with a congenital disorder of
glycosylation
JOURNAL Hum Mutat 38 (2), 148-151 (2017)
PUBMED 27862579
REFERENCE 2 (bases 1 to 4470)
AUTHORS Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
Sacher,M.
TITLE C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
early stage in ER-to-Golgi trafficking
JOURNAL Mol Biol Cell 22 (12), 2083-2093 (2011)
PUBMED 21525244
REFERENCE 3 (bases 1 to 4470)
AUTHORS Wendler,F., Gillingham,A.K., Sinka,R., Rosa-Ferreira,C.,
Gordon,D.E., Franch-Marro,X., Peden,A.A., Vincent,J.P. and Munro,S.
TITLE A genome-wide RNA interference screen identifies two novel
components of the metazoan secretory pathway
JOURNAL EMBO J 29 (2), 304-314 (2010)
PUBMED 19942856
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAXUCZ010000016.1.
On or before Dec 16, 2009 this sequence version replaced
XM_224848.4, XM_001059837.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: SRR26360176.2156962.1,
SRR26360194.1013575.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA5760383, SAMEA5760386
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-249 JAXUCZ010000016.1 51465855-51466103
250-475 JAXUCZ010000016.1 51468525-51468750
476-645 JAXUCZ010000016.1 51469727-51469896
646-716 JAXUCZ010000016.1 51471395-51471465
717-831 JAXUCZ010000016.1 51472382-51472496
832-931 JAXUCZ010000016.1 51474509-51474608
932-1005 JAXUCZ010000016.1 51474929-51475002
1006-1102 JAXUCZ010000016.1 51476160-51476256
1103-1236 JAXUCZ010000016.1 51479137-51479270
1237-1384 JAXUCZ010000016.1 51482503-51482650
1385-1478 JAXUCZ010000016.1 51484355-51484448
1479-1558 JAXUCZ010000016.1 51485082-51485161
1559-1637 JAXUCZ010000016.1 51485253-51485331
1638-1692 JAXUCZ010000016.1 51485407-51485461
1693-1838 JAXUCZ010000016.1 51485783-51485928
1839-1900 JAXUCZ010000016.1 51486558-51486619
1901-2033 JAXUCZ010000016.1 51486712-51486844
2034-2164 JAXUCZ010000016.1 51488067-51488197
2165-2320 JAXUCZ010000016.1 51489459-51489614
2321-2508 JAXUCZ010000016.1 51491364-51491551
2509-2657 JAXUCZ010000016.1 51491656-51491804
2658-2779 JAXUCZ010000016.1 51493681-51493802
2780-2899 JAXUCZ010000016.1 51494267-51494386
2900-2965 JAXUCZ010000016.1 51495963-51496028
2966-3122 JAXUCZ010000016.1 51496130-51496286
3123-3234 JAXUCZ010000016.1 51499050-51499161
3235-3326 JAXUCZ010000016.1 51501705-51501796
3327-3460 JAXUCZ010000016.1 51503483-51503616
3461-3628 JAXUCZ010000016.1 51505867-51506034
3629-4470 JAXUCZ010000016.1 51511162-51512003
FEATURES Location/Qualifiers
source 1..4470
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="16"
/map="16q11"
gene 1..4470
/gene="Trappc11"
/gene_synonym="RGD1309765"
/note="trafficking protein particle complex subunit 11"
/db_xref="GeneID:290746"
/db_xref="RGD:1309765"
exon 1..249
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
misc_feature 185..187
/gene="Trappc11"
/gene_synonym="RGD1309765"
/note="upstream in-frame stop codon"
exon 250..475
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
CDS 272..3673
/gene="Trappc11"
/gene_synonym="RGD1309765"
/note="trafficking protein particle complex 11"
/codon_start=1
/product="trafficking protein particle complex subunit 11"
/protein_id="NP_001162586.1"
/db_xref="GeneID:290746"
/db_xref="RGD:1309765"
/translation="
MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDIIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHAKALCNHDAAVVYPSPDPLETPTGVLDFYGQRPWRQGILSFDLSDPEKEKAGILAIQLKERSVVHSEMIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTLLTSILTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDCDALAVKTAQKLWADRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCVSFNNQGYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKIEITSVDLFLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLPDDEVHWDSIIVQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSQEKSQIRDVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLNPGEQLEKTVYVRCGTVGSRMFLVYVSYLINTTVEGKGIMCKCHKDETVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLMTDILSASPWALTIVSSELQLAPSMAAMDHLESQIDKVVLQTGESASECFCLRCPSAGNLEGGVATGHYIISWKRSSGMENIPAISTIITLPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLLEDTSIAAA"
misc_feature 1058..1834
/gene="Trappc11"
/gene_synonym="RGD1309765"
/note="Foie gras liver health family 1; Region:
Foie-gras_1; pfam11817"
/db_xref="CDD:463359"
misc_feature 3377..3556
/gene="Trappc11"
/gene_synonym="RGD1309765"
/note="Gryzun, putative Golgi trafficking; Region:
Gryzun-like; pfam12742"
/db_xref="CDD:403829"
exon 476..645
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 646..716
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 717..831
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 832..931
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 932..1005
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1006..1102
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1103..1236
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1237..1384
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1385..1478
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1479..1558
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1559..1637
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1638..1692
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1693..1838
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1839..1900
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 1901..2033
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2034..2164
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2165..2320
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2321..2508
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2509..2657
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2658..2779
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2780..2899
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2900..2965
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 2966..3122
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 3123..3234
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 3235..3326
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 3327..3460
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 3461..3628
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
exon 3629..4470
/gene="Trappc11"
/gene_synonym="RGD1309765"
/inference="alignment:Splign:2.1.0"
ORIGIN
atggaacaccttcctaacaagaaaccccgttctattccaggactggtgtgcggtactgtcactcaagcccaggaagtgcttcctgtgccaacggaggcggggaaaaggaagtctcgccttctgccgcccggtctggggctggggctgtcggttgtcggtggccgtgttcctagacgcccctccctgactctcctggctctttcggggccgacggagactcgccgcggctgcagcgggtccagggcctggagttttctgtgacgtcttaaacatgagccccacacagtgggacttccctgtggagttatgttgccggcctatggcttttgttacacttactggccttgatgtggtgtataatgctgtccatcgagcagtctgggatgctttctgtgccaatcggagagctgaccgggtaccaatttctttcaaagtgctcccaggtgaccatgaatacccaaaatgtagatcaaagagaacttcgtatgagtggtacattcctaaaggaatcctaaagaccggctggatgaataagcatctgaacctcgtgccagcgctggtggtcgtgttctatgaactggactgggacgagcctcagtggaaggaaaagcaatctgagtgtgccaccagggtggagattgtcaggcaaagtttgcaagggagaaacacaaaagttgcagtcgtcctgattcaaaagaaaacacctttacccccaggggaagatatcattgcttctgagcgggctgcagctttatgcaatgtgtgtgagctctcaggcaagtctctgttcgtgctgccccacactgaccaccttgtgggctacattataagattagaaaatgcattttatgagcatgcccagacctattactacactgagatcagaagagtgaaatctcataaggaattcttgaataaaacaacacaccagcttttgtttgttagacatcagttcaaaatagctttcttcagtgagttgaaacaagatacacaaaacgccctgaagaattacaggactgcctataacctcgtacatgaactgagggcccatgaaactaatattctggaaattaagacgatggcaggatttataaactacaagatctgtaggctgtgttttcaacacaataccccactagatgccattgctcagtttcgaaaacacattgacttgtgcaagaagaaaattgggagcgcagagctgtcctttgagcatgctgcgtggatgtcgaaacaattccaggcctttggagatttatttgatgaagccattaagttggggctgacagcaattcaaacacagaaccctggtttctactatcagcaggctgcttactatgcccaggagcgaaaacagcacgcaaaagccctctgtaaccatgacgctgctgtggtgtaccccagtcctgatcccttggaaacaccaacaggtgttcttgacttctatggacagaggccctggagacaaggaatactaagctttgacctctcagaccctgaaaaagagaaagcagggattctcgccattcagctgaaggagagaagtgttgtccactccgagatgataatcactcttctgagcaatgccgttgcacagttcaagaagtacaagtgtccacggatgaagagccacctcatggttcagatgggagaggagtattattatgcgaaggactataccaaagctttgaagctgctggactatgtgatgtgtgactaccggagtgaagcatggtggactctcctcacatctatattgacaacagccctgaagtgttcctacctcatggcccagttaaaagattatattacttactctctggaactccttggaagagcttcaactctgaaagatgaccagaaatctcggatagaaaagaacctcatgaatgttttaatgaatgaaagtcctgaccctgaacctgactgtgacgccttagcagtaaagactgctcagaagctgtgggcagaccgggtctctctggctggcagcaatgttttcacaataggcgtacaggacttcgtgccatttgtgcagtgcaaagccaagttccatgctcccagttttcacgtggatgttcctgtccagtttgatgtttatctgaaggccgactgcccacaccccattaggttttccaagctctgtgtcagctttaataatcagggttacaaccagttctgtgtattggaggaagcatcaaaggcaagtgaagtcttagaaaatctgactcaaggaaagatgtgcttagttcctggcaaaacaagaaaattgttatttaaatttgttgccaaaactgaagatgtgggaaagaaaatagagatcacctctgtggatctgtttctgggcagcgagtcaggcaggtgtgtggttttgagctggcaaggaggaggaggggatgctgcttcctcccaggaagccctgcaggctgcaaggtctttcaagaggcggccaaagcttccggacgatgaggttcactgggacagcatcatagtccaggcaagcacaatgatcatttccagagttccaaacatttctgtacatctgcgacatgagcctcctgctctaatgaatgagatgtattgtttggttgtaactgttcaatcccaggaaaagtcccaaatcagggacgtgaagctcactgctggcctaaagccagggcaggatgccaacctgactcagaagacccatgtgacacttcacggagcagagctgtgtgatgagtcctacccagccttactcaccgacattcctgtaggagacttaaacccaggggagcagctggagaaaacagtgtatgttcgctgtggaacagtgggttccagaatgttccttgtgtatgtttcttacctgatcaatacaactgttgaaggaaaaggaattatgtgcaagtgtcacaaggatgaaacagtgacaatagaaactgtctttccatttgatgtcgcagtcagatttgtttccacaaagtttgagcacctggaaagagtctatgcagatatcccctttttgttgatgacggatattttaagtgcctcaccttgggccctcacaatcgtgtccagtgagctacagcttgctccgtctatggctgcaatggatcatctggagtcccaaatagacaaagttgtcttacagacaggagagagcgctagtgagtgcttctgtcttcgctgcccatctgctgggaaccttgaaggtggagtggcaacaggacattacattatctcctggaagaggtcctcaggcatggaaaacatccccgccatcagcaccatcatcacactgcctcacgtgattgttgaaaacatccctctccatgtgaacgcagacctgccctcgtttggacgagtcagagagtcgttacctgtcaggtatcacctacagaataagaccgacttggttcaagatgtggaaatttctgtggagcccagtgatgccttcatgttctcaggcctcaaacagatccgattacgtattctacctggcaccaaacaggagatgctatataatttctatcctctgatggctgggtaccaacagctaccatcgctcaacatcaacctgctgaggtttcccaacttcaccaaccagctgctcagacgcttcataccaaccagcatttttgtgaagccacagggtcgactcttggaggacacctccatcgctgctgcatgatgtccaggaccagctcttggtgttcttacggaggagtcaagagagtacccgggaggtgtactgtgactgtagctttgttcgtggtgaaaagttaatcctgcctgttttttaatggacataatatcagctcttcagagaactcatggttaaaatattgaggaaatcaacttctctagttttactaataaagtttgaaatgtgtcagtgtgatgtgaaaggtgtcaggtcatcattgctgttagaagtcctttcatggttagcacaatgtgccttgacatacagcatcagtagaacagagaccaagtgtggctgacagaggagacacaactcatccgggtctgcctgcaagtgacccaccccataagtcccctgtgtgcttagcgcatacacagcaagtagcacaggtctggctgaaggacagacctttaggggaggggcttcattagagcagttgaaaggtgtaagagttttacttactgttggaaagtttcagactacgacccacacatgcttttgtgtgcatcctgagaggacctgatgataggcttaattagtaaacgaaaagtctgtgagaatgaaacattggagtgttcagtcccattacgtcacttcctaagggcgatcgatttagaatgacctttaagttcatgtaaatggaaacagatcatatggtgaacattttctttgtaaaatatcttaatttaaaactacataatttcttggaaatttgtactatgcagactgcgggcatattgtaaaaaggaaatagtgatgtaaataaaatatgttctctttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]