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2024-03-29 15:26:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001161647            1178 bp    mRNA    linear   MAM 19-FEB-2022
DEFINITION  Sus scrofa claudin 9 (CLDN9), mRNA.
ACCESSION   NM_001161647
VERSION     NM_001161647.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FJ873107.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: FJ873107.1, SRR5120058.7464.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="3"
                     /map="3"
     gene            1..1178
                     /gene="CLDN9"
                     /note="claudin 9"
                     /db_xref="GeneID:100302022"
                     /db_xref="VGNC:VGNC:86741"
     exon            1..1178
                     /gene="CLDN9"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    194..196
                     /gene="CLDN9"
                     /note="upstream in-frame stop codon"
     CDS             209..862
                     /gene="CLDN9"
                     /codon_start=1
                     /product="claudin-9"
                     /protein_id="NP_001155119.1"
                     /db_xref="GeneID:100302022"
                     /db_xref="VGNC:VGNC:86741"
                     /translation="
MASAGLELLGMSLAVLGWLGTLVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCAVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVVLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAASALLMLGGGLLCCTCPPPQIDRPRGPRLGYSIPSRSGASGLDKRDYV"
     misc_feature    221..724
                     /gene="CLDN9"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
attcagcggagcaggactcgagattgattttcttgccgagggtcgagacacatctgcgaggggtgcggagcgaggcgtgaggactcttggtcagaggacgctggctcccgctcctgctgggcaccgagacccccgcccagcacatctgacccgcttctcaggatccaccaggcctcccagagctgggaggatctagccgaggcggcccatggcttcagctggccttgagctcctgggcatgagcctggctgtgctgggctggctggggaccctggtgtgctgcgccctgcccctgtggaaggtgaccgccttcatcggcaacagcatcgtggtggcccaggtggtctgggaggggctgtggatgtcctgcgcggtgcagagcacaggccagatgcagtgcaaggtgtacgactcgctgctggcactgccccaggacctgcaggcggcccgcgccctctgcgtcgtcgccctcctgctggccctgctcggcctgctggtggccatcacgggcgcccagtgcaccacctgcgtggaggacgaaggcgccaaggcccgcattgtgctcacggcgggggtggtcctcctcctgtcgggcatcttggtgctgatccccgtgtgctggacggcgcacgccatcatccaggacttctacaaccccctggtggccgaggccctcaagcgggagctgggagcctccctctacctcggctgggcggcgtctgccctgctcatgctgggcgggggcctcctctgctgcacatgccccccgccccagatcgaccggccccggggaccgaggctgggctactctatcccctcccgctcgggcgcgtctgggctggacaagagggactatgtgtgaggtgcgtgtccccggaagcctgctgctcagaacctcgaccttgtgcccgatgccctcctctcacccgtgccttctccggtcagccccccgcccccatcccaggtgagacccactttccagatgcttgagccgggcctggttgcatcgaaaccctcctcagcggggtccccacctccccccaggcagggtacccgggcctgcccagcacccccaggttgcttttttctaatgtccaggattcaggatggcttcatccagacggcagtggcttctcatgccctccccaacctggagttctgtattcgtcccctctggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]