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2024-03-28 22:34:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001160081            1318 bp    mRNA    linear   MAM 19-FEB-2022
DEFINITION  Sus scrofa claudin 18 (CLDN18), mRNA.
ACCESSION   NM_001160081
VERSION     NM_001160081.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FJ875103.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FJ875103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103886176, SAMN04484926
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="13"
                     /map="13"
     gene            1..1318
                     /gene="CLDN18"
                     /note="claudin 18"
                     /db_xref="GeneID:100294676"
                     /db_xref="VGNC:VGNC:86735"
     misc_feature    66..68
                     /gene="CLDN18"
                     /note="upstream in-frame stop codon"
     CDS             144..929
                     /gene="CLDN18"
                     /codon_start=1
                     /product="claudin-18 precursor"
                     /protein_id="NP_001153553.1"
                     /db_xref="GeneID:100294676"
                     /db_xref="VGNC:VGNC:86735"
                     /translation="
MSTTTCQVVGFLLSVLGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVQQSSGFTECRPYFTILGLPAMLQAVRALMIVGIVLGVIGLLVAIFALKCIRIGNMDDPSKAKMTLTSGIMFIISGLCTIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGGIMMCIACRGLAPEETNYKAVSYHASGHNVAYRPGGFKASTGFESSNKNKKIYDGGARTEDEGQSHPSKYDYV"
     sig_peptide     144..212
                     /gene="CLDN18"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    162..716
                     /gene="CLDN18"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
gatgccctgaaccaagagtgaaactgaactatctaaggaaaacactgtgagcaaacaccaagggctgagggaaaccatctgatcagagcagcttcgcagcaggacgaaggcggcagctgggcggaaggaccagggccgaggccatgtccaccaccacatgccaagtggtgggcttcctgctgtccgtcctgggcctggcgggctgcatcgctgccaccggtatggacatgtggagcacccaggacctgtacgacaacccggtcacctccgtgttccagtacgaggggctctggcggagctgtgtgcagcagagctcgggcttcaccgagtgccggccctacttcaccatcctgggcctgccagccatgctgcaggcagtacgagccctgatgatcgtgggcatagtcctgggtgtcatcggcctcctggtggccatcttcgccctgaaatgtatccgcattggcaacatggacgacccctccaaagccaagatgacactgacctcggggatcatgttcatcatctcaggtctttgcacaatcgctggagtgtctgtatttgccaacatgctggttactaacttctggatgtctacagctaacatgtacactggcatgggtgggatggtgcagactgttcagaccaggtacacctttggtgcagctctgttcgtgggctgggtcgctggaggtctgaccctcattgggggcataatgatgtgcatcgcttgccggggtctggcgcccgaggaaaccaactacaaagccgtgtcttatcatgcctcgggccacaatgtcgcctaccggcctggaggcttcaaagccagcactggctttgagtccagtaacaaaaacaagaagatatacgatgggggtgcccgcacagaggatgagggacaatcccatccttccaagtacgactacgtgtagccctgcaagacacctcggtctgggcagaggaaagcccccacctagagctcacccccaaacaaggacattttaccttgattcccaattgcttctgactcacagttggaaattacaaagccttgatttcacctatggtgaggccagatggtcttggccacctgtgtctaaatgttccatcacaaaacagctgagttatcagaggtacattagaggctctagcccacattttccaatcctcttatttcttttttttaatagaaacttttaaacctgatgatagaatgtactttgaattcctatcaatcacttagataatttagacagatgcaccctcctcctcttggccaacagtccattgattatctatttcccaactcatcccctagaac
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]