2024-03-28 22:34:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001160081 1318 bp mRNA linear MAM 19-FEB-2022 DEFINITION Sus scrofa claudin 18 (CLDN18), mRNA. ACCESSION NM_001160081 VERSION NM_001160081.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FJ875103.1. ##Evidence-Data-START## Transcript exon combination :: FJ875103.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886176, SAMN04484926 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1318 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="13" /map="13" gene 1..1318 /gene="CLDN18" /note="claudin 18" /db_xref="GeneID:100294676" /db_xref="VGNC:VGNC:86735" misc_feature 66..68 /gene="CLDN18" /note="upstream in-frame stop codon" CDS 144..929 /gene="CLDN18" /codon_start=1 /product="claudin-18 precursor" /protein_id="NP_001153553.1" /db_xref="GeneID:100294676" /db_xref="VGNC:VGNC:86735" /translation="
MSTTTCQVVGFLLSVLGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVQQSSGFTECRPYFTILGLPAMLQAVRALMIVGIVLGVIGLLVAIFALKCIRIGNMDDPSKAKMTLTSGIMFIISGLCTIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGGIMMCIACRGLAPEETNYKAVSYHASGHNVAYRPGGFKASTGFESSNKNKKIYDGGARTEDEGQSHPSKYDYV"
sig_peptide 144..212 /gene="CLDN18" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 162..716 /gene="CLDN18" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gatgccctgaaccaagagtgaaactgaactatctaaggaaaacactgtgagcaaacaccaagggctgagggaaaccatctgatcagagcagcttcgcagcaggacgaaggcggcagctgggcggaaggaccagggccgaggccatgtccaccaccacatgccaagtggtgggcttcctgctgtccgtcctgggcctggcgggctgcatcgctgccaccggtatggacatgtggagcacccaggacctgtacgacaacccggtcacctccgtgttccagtacgaggggctctggcggagctgtgtgcagcagagctcgggcttcaccgagtgccggccctacttcaccatcctgggcctgccagccatgctgcaggcagtacgagccctgatgatcgtgggcatagtcctgggtgtcatcggcctcctggtggccatcttcgccctgaaatgtatccgcattggcaacatggacgacccctccaaagccaagatgacactgacctcggggatcatgttcatcatctcaggtctttgcacaatcgctggagtgtctgtatttgccaacatgctggttactaacttctggatgtctacagctaacatgtacactggcatgggtgggatggtgcagactgttcagaccaggtacacctttggtgcagctctgttcgtgggctgggtcgctggaggtctgaccctcattgggggcataatgatgtgcatcgcttgccggggtctggcgcccgaggaaaccaactacaaagccgtgtcttatcatgcctcgggccacaatgtcgcctaccggcctggaggcttcaaagccagcactggctttgagtccagtaacaaaaacaagaagatatacgatgggggtgcccgcacagaggatgagggacaatcccatccttccaagtacgactacgtgtagccctgcaagacacctcggtctgggcagaggaaagcccccacctagagctcacccccaaacaaggacattttaccttgattcccaattgcttctgactcacagttggaaattacaaagccttgatttcacctatggtgaggccagatggtcttggccacctgtgtctaaatgttccatcacaaaacagctgagttatcagaggtacattagaggctctagcccacattttccaatcctcttatttcttttttttaatagaaacttttaaacctgatgatagaatgtactttgaattcctatcaatcacttagataatttagacagatgcaccctcctcctcttggccaacagtccattgattatctatttcccaactcatcccctagaac
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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