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2024-03-28 23:14:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001159660             870 bp    mRNA    linear   MAM 01-JUL-2020
DEFINITION  Sus scrofa distal-less homeobox 5 (DLX5), mRNA.
ACCESSION   NM_001159660
VERSION     NM_001159660.1
KEYWORDS    RefSeq.
SOURCE      Sus scrofa (pig)
  ORGANISM  Sus scrofa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
            Sus.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Cheng HC, Zhang FW, Jiang CD, Li FE, Xiong YZ and Deng CY.
  TITLE     Isolation and imprinting analysis of the porcine DLX5 gene and its
            association with carcass traits
  JOURNAL   Anim. Genet. 39 (4), 395-399 (2008)
   PUBMED   18498429
  REMARK    GeneRIF: Imprinting analysis shows that DLX5 is maternally
            expressed in some organs and tissues but not imprinted in others.
REFERENCE   2  (bases 1 to 870)
  AUTHORS   Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H,
            Okumura N, Hamasima N and Awata T.
  TITLE     PEDE (Pig EST Data Explorer): construction of a database for ESTs
            derived from porcine full-length cDNA libraries
  JOURNAL   Nucleic Acids Res. 32 (Database issue), D484-D488 (2004)
   PUBMED   14681463
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU168272.1.
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Sus scrofa"
                     /mol_type="mRNA"
                     /db_xref="taxon:9823"
                     /chromosome="9"
                     /map="9"
                     /breed="Large White"
     gene            1..870
                     /gene="DLX5"
                     /note="distal-less homeobox 5"
                     /db_xref="GeneID:100286863"
                     /db_xref="VGNC:VGNC:87341"
     CDS             1..870
                     /gene="DLX5"
                     /codon_start=1
                     /product="homeobox protein DLX-5"
                     /protein_id="NP_001153132.1"
                     /db_xref="GeneID:100286863"
                     /db_xref="VGNC:VGNC:87341"
                     /translation="
MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKALDPYQYQYPGVSGSAGSYPAKAYADYSYASPYHQYGGAYNRVPSATSQPEKEVAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHVPPPGSLQHPLALASGTLY"
     misc_feature    94..354
                     /gene="DLX5"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:432536"
     misc_feature    order(412..426,430..432,481..483,499..501,538..540,
                     544..549,556..561,565..573,577..582)
                     /gene="DLX5"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    418..579
                     /gene="DLX5"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(418..420,427..429,547..549,556..561,568..570)
                     /gene="DLX5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            1..355
                     /gene="DLX5"
                     /inference="alignment:Splign:2.1.0"
     exon            356..540
                     /gene="DLX5"
                     /inference="alignment:Splign:2.1.0"
     exon            541..870
                     /gene="DLX5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgacaggggtgtttgacaggagggtccccagcatccgatccggcgacttccaagccccgttccagacgtccgcagccatgcaccatccgtctcaggaatcgccaactttgcccgagtcgtcggctaccgattccgactactacagccccacggggggagccccgcacggctactgctctcctacctcggcttcctacgggaaagcgctcgacccctaccagtaccagtaccccggcgtgagcggctccgccggcagctatcccgccaaagcttacgccgactacagctacgccagcccctatcaccagtacggcggcgcctacaaccgcgtcccgagcgccaccagccagccagagaaagaagtggccgagcccgaggtgagaatggtgaacggcaaaccaaagaaagttcgtaaacccaggactatttattccagctttcagctggccgcgttacagagaaggtttcagaagactcagtacctcgccctgcccgaacgcgccgagctggccgcctcgctgggactgacgcaaacacaggtgaaaatctggtttcagaacaaaagatccaagatcaagaagataatgaaaaacggggagatgcccccggagcacagccccagctccagcgaccccatggcgtgtaactcgccgcagtctccggctgtgtgggagccccagggttcgtcccgctcgctcagccaccaccctcatgcccaccctccgacctccaaccagtcccccgcgtccagctacctggagaactcggcttcctggtacccgagcgcggccagctcaatcaattcccacgtgccgccgcccggctccttgcagcacccgctggcgctggcctcggggacgctctattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]