2024-03-28 23:14:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001159660 870 bp mRNA linear MAM 01-JUL-2020 DEFINITION Sus scrofa distal-less homeobox 5 (DLX5), mRNA. ACCESSION NM_001159660 VERSION NM_001159660.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 870) AUTHORS Cheng HC, Zhang FW, Jiang CD, Li FE, Xiong YZ and Deng CY. TITLE Isolation and imprinting analysis of the porcine DLX5 gene and its association with carcass traits JOURNAL Anim. Genet. 39 (4), 395-399 (2008) PUBMED 18498429 REMARK GeneRIF: Imprinting analysis shows that DLX5 is maternally expressed in some organs and tissues but not imprinted in others. REFERENCE 2 (bases 1 to 870) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries JOURNAL Nucleic Acids Res. 32 (Database issue), D484-D488 (2004) PUBMED 14681463 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU168272.1. FEATURES Location/Qualifiers source 1..870 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="9" /map="9" /breed="Large White" gene 1..870 /gene="DLX5" /note="distal-less homeobox 5" /db_xref="GeneID:100286863" /db_xref="VGNC:VGNC:87341" CDS 1..870 /gene="DLX5" /codon_start=1 /product="homeobox protein DLX-5" /protein_id="NP_001153132.1" /db_xref="GeneID:100286863" /db_xref="VGNC:VGNC:87341" /translation="
MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKALDPYQYQYPGVSGSAGSYPAKAYADYSYASPYHQYGGAYNRVPSATSQPEKEVAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHVPPPGSLQHPLALASGTLY"
misc_feature 94..354 /gene="DLX5" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(412..426,430..432,481..483,499..501,538..540, 544..549,556..561,565..573,577..582) /gene="DLX5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 418..579 /gene="DLX5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(418..420,427..429,547..549,556..561,568..570) /gene="DLX5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..355 /gene="DLX5" /inference="alignment:Splign:2.1.0" exon 356..540 /gene="DLX5" /inference="alignment:Splign:2.1.0" exon 541..870 /gene="DLX5" /inference="alignment:Splign:2.1.0" ORIGIN
atgacaggggtgtttgacaggagggtccccagcatccgatccggcgacttccaagccccgttccagacgtccgcagccatgcaccatccgtctcaggaatcgccaactttgcccgagtcgtcggctaccgattccgactactacagccccacggggggagccccgcacggctactgctctcctacctcggcttcctacgggaaagcgctcgacccctaccagtaccagtaccccggcgtgagcggctccgccggcagctatcccgccaaagcttacgccgactacagctacgccagcccctatcaccagtacggcggcgcctacaaccgcgtcccgagcgccaccagccagccagagaaagaagtggccgagcccgaggtgagaatggtgaacggcaaaccaaagaaagttcgtaaacccaggactatttattccagctttcagctggccgcgttacagagaaggtttcagaagactcagtacctcgccctgcccgaacgcgccgagctggccgcctcgctgggactgacgcaaacacaggtgaaaatctggtttcagaacaaaagatccaagatcaagaagataatgaaaaacggggagatgcccccggagcacagccccagctccagcgaccccatggcgtgtaactcgccgcagtctccggctgtgtgggagccccagggttcgtcccgctcgctcagccaccaccctcatgcccaccctccgacctccaaccagtcccccgcgtccagctacctggagaactcggcttcctggtacccgagcgcggccagctcaatcaattcccacgtgccgccgcccggctccttgcagcacccgctggcgctggcctcggggacgctctattag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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