2024-03-29 20:35:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001146383 1344 bp mRNA linear VRT 12-JAN-2022 DEFINITION Salmo salar Claudin-5 (cld5), mRNA. ACCESSION NM_001146383 VERSION NM_001146383.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1344) AUTHORS Ramberg S, Hoyheim B, Ostbye TK and Andreassen R. TITLE A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon JOURNAL Front Genet 12, 656334 (2021) PUBMED 33986770 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1344) AUTHORS Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF. TITLE Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome JOURNAL BMC Genomics 11, 279 (2010) PUBMED 20433749 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT056482.1. ##Evidence-Data-START## Transcript exon combination :: BT056482.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1344 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa11" /map="ssa11" gene 1..1344 /gene="cld5" /note="Claudin-5" /db_xref="GeneID:100286444" misc_feature 182..184 /gene="cld5" /note="upstream in-frame stop codon" CDS 203..520 /gene="cld5" /codon_start=1 /product="Claudin-5" /protein_id="NP_001139855.1" /db_xref="GeneID:100286444" /translation="
MLSACLEFLGMGLCLLGSLLVMVACGLPMWKVTAFIDMNIVVAQTIWDGLWMSCVVQSTGHLHWLGGHSQGGLPQQICPHQDHLGQWRLRQETLCVGEERRDLRT"
ORIGIN
gggagagtggattcagaccagccagagagcctatataccttattaaacaggttcttctcctagcctctctttgatcatctattacaagcctaacatttctagagcgaataggagaaagagattattttgatattcgagtggatattaaattacatttgtattcactctcctctttctgttttaaagaagaaaaaggctcaccatgctctctgcatgtctggagttccttgggatggggttgtgcctactgggctcgctcctggtcatggtcgcgtgcgggctgcccatgtggaaggtgacggcgttcatcgatatgaatatcgtggtagcgcagaccatctgggacgggctctggatgtcgtgcgtggtgcagagcacgggccatctacattggctgggcggccacagccaagggggcctaccccaacaaatatgcccccaccaagaccatctcggccaatggagacttcgacaagaaacattatgtgtaggtgaggagaggagagatttacgcacatgaaaacttggcacgggagctggacggacaagttgtctacttagcctactgtttgatgcccattgcgtatgttatctttattgtgtttccctagaacggaggcttcgatgagggacattatgtgtaggcgagatgatgtcaggatacgttttttttcctttgctttgattgtcatggcgacttcaccaaaatgtccaactttttttctgtgttgtaggctacaactttgtttaggggtctggccatgggttcattggtctgatgatcagaaaaggaaaaattcaattttttgccaaaggaatggaaccctatgcgcgccgagattgtagctcaagactgaccaagaaattgaaacagttgttgtgtagtctatctattgtgtaccatttttttaagacttaaatcttgtatttgcacatgattattttaaaatgttaatgttcatgtggttatcgtttgacactagtctattgtctcgccagagttggctgtcacggtctgtgtgctctgtgaataaagcccattgttctccactggctttactgtgtctgcttggaagttttaaataaccacataatgtacatgtttgcagagaccggtaatcgttaacatgtttagattcccacactggactcctcctttgtaacacagtgaatgctactcagacaaatgttcactcatatgatgatcaaaggagcttatttgcatttgaatgctgttgtattttattgcatggctgagtgtgtatctatcttttgtcctagccctccttatagtactgggcaattgttgttttataataaaaaagaaagtcccaattcacaatc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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