LOCUS       NM_001141277            1511 bp    mRNA    linear   VRT 12-JAN-2022
DEFINITION  Salmo salar claudin f (cldnf), mRNA.
ACCESSION   NM_001141277
VERSION     NM_001141277.2
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ramberg S, Hoyheim B, Ostbye TK and Andreassen R.
  TITLE     A de novo Full-Length mRNA Transcriptome Generated From
            Hybrid-Corrected PacBio Long-Reads Improves the Transcript
            Annotation and Identifies Thousands of Novel Splice Variants in
            Atlantic Salmon
  JOURNAL   Front Genet 12, 656334 (2021)
   PUBMED   33986770
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao
            NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF.
  TITLE     Salmo salar and Esox lucius full-length cDNA sequences reveal
            changes in evolutionary pressures on a post-tetraploidization
            genome
  JOURNAL   BMC Genomics 11, 279 (2010)
   PUBMED   20433749
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT048904.1.
            
            On Apr 10, 2020 this sequence version replaced NM_001141277.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT048904.1 [ECO:0000332]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1511              BT048904.1         6-1516
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa20"
                     /map="ssa20"
     gene            1..1511
                     /gene="cldnf"
                     /gene_synonym="cldy"
                     /note="claudin f"
                     /db_xref="GeneID:100196248"
     exon            1..1511
                     /gene="cldnf"
                     /gene_synonym="cldy"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..807
                     /gene="cldnf"
                     /gene_synonym="cldy"
                     /note="Claudin-like protein ZF-A89"
                     /codon_start=1
                     /product="claudin f"
                     /protein_id="NP_001134749.1"
                     /db_xref="GeneID:100196248"
                     /translation="

MGRIGKEVLGQVLSFIGFVGVAVTTGIPMWRVTTYIGANIVTGQIVWDGLWMNCVMQSTGQMQCKINDSIMRLSTDLQAARALVIISIIFNFVGLIVTFIGGQCTSTLKSESSKGKVMILGGILLLIGALLVLIPVCWSAAFTISDFNNPLTIETQRREIGASIYIGWGSTALLLIGGIILCTSCPPQKMYGYPGYPQGAPMYPYPGQPMVQAGPYGRVYTPTSRPYSGTGSYAPSKPYTAPIEYAVPGRPGRYL"

     misc_feature    73..582
                     /gene="cldnf"
                     /gene_synonym="cldy"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      

agacttctctttctcccacttcggacacaacctttggtcatgggaaggattggaaaggaggtgttgggccaggtgctcagcttcatcggcttcgtgggggtggcagtgaccacgggtatccccatgtggagggtaaccacttacatcggtgccaacatcgtaacaggacagattgtgtgggacggcctgtggatgaactgcgtgatgcagagcacgggacagatgcagtgcaagataaacgactcaataatgaggctatcgacagaccttcaggcagcgagggccctggtcatcatctccattatcttcaactttgtcggcctgattgtcaccttcatcgggggccagtgcaccagcaccctgaagtctgaatcctccaagggtaaagtgatgatccttggaggcatcctgctgctcattggtgctcttctggtcctcatccccgtctgctggtcggcagcgtttaccatctcagactttaataaccctctgaccattgagacccagaggagggagataggagcctccatctacatcggctggggctccacagcactgctcctcatcggggggataatcctctgcacctcctgcccgccccagaagatgtatgggtacccaggctatcctcaaggagcgcccatgtacccctatccaggccaaccaatggtccaggcagggccctatgggagagtttacaccccaaccagtagaccctactcagggacaggttcatatgcaccaagcaagccatacacagcaccaatagaatacgctgtacctggacggcctggacggtatctgtaacaaagtgaaatggaaaaagggaacgtctccctgaatactgactggtattttggaccctgacgttttcaagctattgttttgctgagctttgcctctgcagagtttaattgcaccaccaaaatgtacttttatcatgtacttttgtccacattgatatgtagatattgttattgatgagaataacatgcaatttatagacatgaaaatgattgtgtgaatgatattcattatgtttacgagtgtttgcactttcacacaagaggaagaatctgttctttctaatgttgacaatgtaaatccttatgtcttaatgcaaacattacaacaaattgtttgataatgagaatggatgtagcgtaaatgttcattttagcagcaacctgtgttctcccattgtgcaaccggtactgttgtctagtaaatagctggctggtctatgacttgtgatgtatctgtacacatgtatctgtatctgaaaacaacacatttttctgtaaatattttgtggatatatttaccaaatataaacacacattttattacataaaataatgtgtagtcttaatgtgtctttgtggaaaagttgggaaacaacaactgcgatttcaagtgttcattaactatgagcaataatcataccaataatcaaagcctatgcattttctaacttacgattcatgttataaaagttgcattttgaattc

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