2024-03-29 14:58:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001139572 925 bp mRNA linear VRT 10-JAN-2022 DEFINITION Salmo salar homeo box A9b (hoxa9b), mRNA. ACCESSION NM_001139572 VERSION NM_001139572.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 925) AUTHORS Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D. TITLE Differential evolution of the 13 Atlantic salmon Hox clusters JOURNAL Mol Biol Evol 25 (7), 1333-1343 (2008) PUBMED 18424774 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU025702.1. ##Evidence-Data-START## Transcript exon combination :: EF695322.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02864171 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..925 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa02" /map="ssa02" gene 1..925 /gene="hoxa9b" /note="homeo box A9b" /db_xref="GeneID:100194482" exon 1..597 /gene="hoxa9b" /inference="alignment:Splign:2.1.0" CDS 45..836 /gene="hoxa9b" /note="homeobox protein HoxA9b" /codon_start=1 /product="homeobox protein Hox-A9b" /protein_id="NP_001133044.1" /db_xref="GeneID:100194482" /translation="
MSTLGTLSYYADSHLPRDQGDIMAHTYSSGPGLEQASQPMLTEYGGQESCPLQTKSSIFSASWSPISAHQPPSSASITHQPYLHHHCPTGDTDGMFMRSWALEPVSTSICLTGLSSNMNYDIKPEPLIGNGDCTTLETHTPLVSDIDNGPFRAEKDTIACDAIFSKPNEESSTSTVEEKREINTNDPSSNWLHAKSSRKKRCPYSKHQILELEKEFLFNMYLPRDRRYEVARVLHLTERQIKIWFQNRRMKMKKGNKDRRKTC"
misc_feature 45..593 /gene="hoxa9b" /note="Hox9 activation region; Region: Hox9_act; pfam04617" /db_xref="CDD:428038" misc_feature order(636..650,654..656,705..707,723..725,762..764, 768..773,780..785,789..797,801..806) /gene="hoxa9b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 642..803 /gene="hoxa9b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(642..644,651..653,771..773,780..785,792..794) /gene="hoxa9b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 598..925 /gene="hoxa9b" /inference="alignment:Splign:2.1.0" ORIGIN
tccagtggaagtttagttgcctttggctttgtgtatttgttgtcatgtcgacattaggcacgcttagttactatgcagactctcatcttccccgcgaccaaggggatattatggcacacacatactcaagcggaccagggctggaacaggcgagccagccgatgctaactgaatatggcggtcaggaatcttgccctttgcagacgaaatcttctattttcagtgcgtcttggagtcccatttctgctcatcagcccccgagcagcgcctctataacacaccagccctatttacaccaccattgtccaacaggagataccgatgggatgtttatgcgttcctgggcgttggaaccggtttctacgtcgatatgtttaacgggattatcgtcaaatatgaactatgatatcaaaccggagccgctgataggaaatggggactgcacaacgctggaaacgcacacacctcttgtgtccgacattgacaacggaccgttccgcgcagagaaggatacgattgcgtgtgatgccattttctccaaacccaacgaagagagcagcacatcaaccgtagaggaaaagagggagatcaacacaaatgacccatcttccaactggcttcatgcaaaatccagcagaaaaaagcgctgtccatactctaagcatcagattctggaactggagaaggagtttctgtttaacatgtatctcccccgagaccgtagatacgaagtagcaagagttcttcatctgactgagagacaaattaaaatctggtttcagaaccgccggatgaagatgaagaaagggaataaggaccgtcgaaagacatgttaaaatgcgagcagtgcgggcctgtagacccgtagaataaactgtgaatacttacaattggtggactttcaggaaacgaagatatttctaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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