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2021-10-17 16:24:18, GGRNA.v2 : RefSeq release 207 (Jul, 2021)

LOCUS       NM_001135607             908 bp    mRNA    linear   ROD 16-MAR-2021
DEFINITION  Rattus norvegicus reproductive homeobox on X chromosome 3 (Rhox3),
            mRNA.
ACCESSION   NM_001135607
VERSION     NM_001135607.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ058651.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ058651.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760384, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..908
                     /gene="Rhox3"
                     /note="reproductive homeobox on X chromosome 3"
                     /db_xref="GeneID:100190895"
                     /db_xref="RGD:2301305"
     exon            1..400
                     /gene="Rhox3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    361..363
                     /gene="Rhox3"
                     /note="upstream in-frame stop codon"
     CDS             385..861
                     /gene="Rhox3"
                     /note="rhox homeobox family member 1-like"
                     /codon_start=1
                     /product="reproductive homeobox on X chromosome 3"
                     /protein_id="NP_001129079.1"
                     /db_xref="GeneID:100190895"
                     /db_xref="RGD:2301305"
                     /translation="
MDSTQGTKVLLTEEGRNEEDRGQGEPAMGATAAKVRVIKELNREGPAAGTAGLVDTDVNKEDGGANGGQKNEQQLKEPIPEHAEGKSVQSVPRQVPRRRLRHRFTQWQLEELESIFKANCFLSVEARKQLARWMGVTEAIVKRWFRKRREQYRRYKRL"
     misc_feature    order(676..690,694..696,745..747,763..765,802..804,
                     808..813,820..825,829..837,841..846)
                     /gene="Rhox3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(682..684,691..693,811..813,820..825,832..834)
                     /gene="Rhox3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    685..843
                     /gene="Rhox3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     exon            401..764
                     /gene="Rhox3"
                     /inference="alignment:Splign:2.1.0"
     exon            765..810
                     /gene="Rhox3"
                     /inference="alignment:Splign:2.1.0"
     exon            811..908
                     /gene="Rhox3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
cttaatcctctcaaataggctcttataattgaccactatcccttccctaggaagataattcaccaaagtcagaggactcagctgagatgctgcttaaaaggccatttccgcatctctacttgcccaaggactgtgccctccctgaaaacacattctgtttatcacagcaccaaactgctctcactagggcacctcagggctcaatccatagcaacaggtgatgagcttgaagccagaacattacatctataactggacacatagtaatgtggaatgggctggaagaaatctcttccaggtcaagggtcactgcttctgctctattaccggaactacatcggaattaccagaggttccagttaattctacagatgtaaaactaaaatggacagcactcaaggtacaaaggttttgctgactgaagagggaagaaacgaggaagatagaggacagggcgagccggcaatgggagccacagcagcaaaagtgagagtaataaaagaattaaacagagagggtcctgctgctggcactgcaggccttgtagatacagacgtgaacaaggaagatggtggcgccaacggaggccagaagaatgagcagcaactgaaggagccgattcctgagcatgctgagggcaagagtgtccagtctgtgcctaggcaggtgccacgacgtcgactacgccatagattcacccagtggcagttggaggaactagagagcattttcaaggccaattgcttcctcagtgtagaagcaagaaaacaactggccagatggatgggtgtgactgaagccatagtgaagagatggtttcggaagaggagagaacaatacaggcgatataagaggctataaggtctctgaagttctcctgctttctagtacatttttccctggcaact
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]