2024-03-28 17:18:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001134095 3427 bp mRNA linear PRI 26-MAR-2023 DEFINITION Pongo abelii PBX/knotted 1 homeobox 2 (PKNOX2), mRNA. ACCESSION NM_001134095 VERSION NM_001134095.1 KEYWORDS RefSeq. SOURCE Pongo abelii (Sumatran orangutan) ORGANISM Pongo abelii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR860477.1. ##Evidence-Data-START## Transcript exon combination :: CR860477.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3427 /organism="Pongo abelii" /mol_type="mRNA" /db_xref="taxon:9601" /chromosome="11" /map="11" gene 1..3427 /gene="PKNOX2" /note="PBX/knotted 1 homeobox 2" /db_xref="GeneID:100174645" misc_feature 209..211 /gene="PKNOX2" /note="upstream in-frame stop codon" CDS 221..1639 /gene="PKNOX2" /note="PBX/knotted homeobox 2" /codon_start=1 /product="homeobox protein PKNOX2" /protein_id="NP_001127567.1" /db_xref="GeneID:100174645" /translation="
MMQHASPAPALTMMATQNVPPPPYQDSPQMTATTQPPSKAQAVHISAPSAAASTPVPSAPIDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFVNARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEHSDSLV"
misc_feature 221..406 /gene="PKNOX2" /note="propagated from UniProtKB/Swiss-Prot (Q5R6L1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature <227..>418 /gene="PKNOX2" /note="biotin carboxyl carrier protein of acetyl-CoA carboxylase; Region: PLN02983" /db_xref="CDD:215533" misc_feature 506..763 /gene="PKNOX2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:435375" misc_feature order(1085..1099,1103..1105,1163..1165,1181..1183, 1220..1222,1226..1231,1238..1243,1247..1255) /gene="PKNOX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1091..1093,1100..1102,1229..1231,1238..1243, 1250..1252) /gene="PKNOX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1139..1255 /gene="PKNOX2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 1271..1333 /gene="PKNOX2" /note="propagated from UniProtKB/Swiss-Prot (Q5R6L1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1376..1435 /gene="PKNOX2" /note="propagated from UniProtKB/Swiss-Prot (Q5R6L1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1487..1636 /gene="PKNOX2" /note="propagated from UniProtKB/Swiss-Prot (Q5R6L1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" ORIGIN
ggatgaagattggcatcaggtgaagtctggagcaggacttctgaagctttctatcctccatgctgctcactagaaaaggggctgtgaactgtgctttggctctagcagacaggaagaaattctggcccagctggaagtagaaagaggggagtgagtctcctgaggaccatctcagaggcccccgggatcacccgaacagtcctccatgtgaatcaatcccatgatgcaacatgcctccccagcccccgctctgacgatgatggccacgcagaatgtcccgcccccaccctaccaggacagcccacagatgacggcaaccacccagccaccctccaaggcccaggctgtccacatctctgccccctcagctgctgccagcacacctgtgcccagtgcccccatcgacccccaggcccagctggaggctgacaagcgagctgtatacaggcaccctcttttcccgctcctgacgctgctgtttgagaaatgtgaacaggccacccagggctctgagtgcatcacctccgccagctttgatgtggacatcgagaactttgtccaccaacaggaacaggagcacaaacccttcttcagcgatgacccagaactggacaatctgatggtgaaggcaatccaggtcctgagaatccacctgctggagctggagaaagtcaatgaactctgcaaggacttttgtaaccgttacatcacctgcctcaaaaccaagatgcacagcgataacctgctcaggaatgatctaggggggccatactcccccaaccagccctccatcaaccttcactcacaggacctcctgcagaattcccccaattccatgtctggagtctccaataacccccaggggattgtggtcccagcctcagcgctccagcagggcaacatcgccatgacaaccgtcaactcacaagtcgtgtcaggtggagccttataccaaccggttaccatggtaacctcccagggtcaggtggtcacccaagcaatcccccagggagccatccagatccagaacacacaggttaaccttgacctcacctccctcctggacaatgaggataagaagtccaagaacaaacgaggagtcttgcccaagcatgccaccaatataatgcgttcttggctcttccagcatctcatgcacccctaccccacggaggatgagaagaggcagatcgcagcccagaccaacctcaccctcctgcaagtaaacaactggttcgtcaatgcccggaggcgcatcctgcagcccatgcttgatgccagcaacccagatcctgcccccaaagccaagaagatcaagtcccagcaccggcccacccaaagattctggcccaactccatcgctgcgggggtgctgcagcagcagggtggtgccccagggacaaaccccgatggttccatcaacttagacaacctgcagtccctgtcctcagacaatgccaccatggccatgcagcaggctatgatggctgcacacgatgactcattggatgggacagaagaagaggatgaggatgagatggaagaggaggaggaggaggagctggaggaggaggtcgatgagctgcagacgacgaatgtcagcgacctgggcttggaacacagtgactccctggtgtagtcgggcagcccagatggcactgatcaccgagcaggagaggagtgtcgccgggaggccttcagggtgggggggaaggggacatgggcaggaagcactgagggagttgggccctagcttccccaaatcagtagcttgaagaaaggcagaggagacacctgttccttcccaaccaccgagcctcaatgaggaccccagccccacttccctggaactgctgaggactctgtttggtggggccagtcgagcagcctgtatggaaagacaggactgagatctggactcaccaaatccctgaggacagatggcacccatggcccccacccacggaaggacttgagttgtttacaagccctgcactgtgaggcagattggtgctgttcgcagagtaggcctttgcccgggggcagacttagaaggaaggggagagacaaagggggactgagtttcatccccagaaggttctcagctcctttgacagacattcaagggcaggagggagccccaaagcataaccagtggccagaggagtgggagggcctgaggcatcacatcttgcagatcagaatgggatggaatccaccgggctccagctcatccctccaaggccctgtctctgcgcacagcaaccatggacatgggagagagggatgggagccacagtgcccttcactctctcctggaaacaaattgtaagctggtgggctcaacctgtgggaggttaagaggagtcccttctgggttgactccaggagccaaggagatggcagaccctgggctaggagccatatcgaggtgactttgaggccacagctgtccctaggtggtcacagaacttagctcctgtaacaacaggacaatggtgttttaccctagatgttcccaccctcagcactccacgccctccatagaccttcagagaaggcgaaaccaggttatctgggaatctttccaccccgcaggtcgccacggccgtccctctgctcccaggctggctccatccgcctccagcttcctttcttcattctgtccttcagggaaggcagaagaaacattggaaagcatctagtccagtgggaagccaggggttggagaaggtgctacatccctcttcccatcaatatcccaaatgtgggggaggtcccagagaacggcacccaagagcctgtgggaatgcccaccccacccaccccatccaccctgctgttctaaccctgctgtccacagccctggaggaactggggctcctggaaagaggaggaggctctccactgtccaccctaacacataccctcccacccaccttccataccccttggttggcacgctctcctctcgttctgtctcaccccatggctgtgaatgacaggacaggtcacacgtgtgttttccattgggtttaatttaatggacgtgcagtttcatttgtaaattgtgcattggccatctccttcagtggcaggatgtgagtggctacctggctcaactggaggggaccctcggggccctctggggcttcccctcccccacctggttggggtagagcaaaaggatggtcactcttccaaggtctccctgaaatgaatgtatttctccccccaaaagagctgatatttaatgttttaatagggatttttgagaaacaaataaccttatttataatctgggtgatccaatcattttttactcccttttgatgccatacatagaggaaagtctagcttttttggcgtgagacttttggaatgtgcagtgggataaaatgcgtttcctttaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]