2024-03-29 21:17:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001122909 1195 bp mRNA linear VRT 27-JUN-2020 DEFINITION Oryzias latipes GS homeobox 2 (gsx2), mRNA. ACCESSION NM_001122909 VERSION NM_001122909.1 KEYWORDS RefSeq. SOURCE Oryzias latipes (Japanese medaka) ORGANISM Oryzias latipes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF624465.1. ##Evidence-Data-START## Transcript exon combination :: EF624465.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00029879, SAMD00029883 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1195 /organism="Oryzias latipes" /mol_type="mRNA" /db_xref="taxon:8090" /chromosome="4" /map="4" gene 1..1195 /gene="gsx2" /note="GS homeobox 2" /db_xref="GeneID:100144353" exon 1..438 /gene="gsx2" /inference="alignment:Splign:2.1.0" misc_feature 42..44 /gene="gsx2" /note="upstream in-frame stop codon" CDS 63..779 /gene="gsx2" /codon_start=1 /product="GS homeobox 2" /protein_id="NP_001116381.1" /db_xref="GeneID:100144353" /translation="
MSRSFYVDSLIIKDTVRPGPADHPGQDFLIPISMHSPSVMSVTAPVCPSRKTGTFCVCPLCVTSHIHAPCSGIPMLKSQFPGAEAQYCQRLAQQQPPALAHPGHAPVCTPTFSVRDPRRYHYLSMGSSENSHAQNGKRMRTAFTSTQLLELEREFSTNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKATQRSAHSSCKCAVALTDYSQSEDEKSLSPASASEDKEVSPL"
misc_feature order(471..485,489..491,540..542,558..560,597..599, 603..608,615..620,624..632,636..641) /gene="gsx2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(477..479,486..488,606..608,615..620,627..629) /gene="gsx2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 480..638 /gene="gsx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 439..1176 /gene="gsx2" /inference="alignment:Splign:2.1.0" ORIGIN
gccatcgtcatcatcatcatcctcgtcatcaccagggagcctgaagccatcgcagcgcagtcatgtccaggtctttctatgtcgactccttaataatcaaggatactgtgcgacctggaccagcggatcatccaggacaagacttcctcattcccatcagcatgcactccccgagcgtaatgtctgtcaccgcgccggtgtgcccgtcccgaaaaaccgggactttctgcgtttgcccgctgtgcgtcacatcccacatccacgctccctgcagtggaattcccatgctgaagagtcagttcccaggcgcagaggcacagtactgtcagaggctggcacagcagcagcctcctgcgctcgcgcatcctggacatgcacctgtctgcacgcccaccttcagcgtcagagatcccaggagataccactatctttccatgggttcctctgaaaatagccacgctcagaatggcaaaaggatgcgcacggctttcacgagcacgcaactcctggagcttgaaagggagttttcaacgaacatgtacctttccagactgagaagaatcgaaatcgccacgtatttgaatctgtcagaaaagcaggtgaaaatctggtttcaaaatcgcagagtgaagcacaagaaggagggcaaagccacccagaggagcgcgcactcaagttgcaaatgcgcagtggctcttacagactattcacagtcggaggatgagaaatctttatctccggcctctgcttcggaggacaaggaggtgtcccctctctgagactcagtggactgctggagtcccatggtggcacttaactctgccctgcatgctgcaatcatggcatcgacctctgaaccaaaaacgtcctgcatgaagtcgataaactaagggtgctaagagaaaaccttcacttccattctcactatgactgaatagcagtttttgacatttaaatactgtgttgaagactgagcgcatgcgtgcttcgtatcgtggttctcacctgcactccaactgaccctcacttcaatagatgttgcctgataattcaacaacgagtgaagcatgtgttgtaaaaaggaaagacgaaaagtgcaggcgtaacttagagcgtgcacgcaggaatttgtacatacatacctgtatttattgcaataaacatgacgagctggagcaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]